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The map label for this gene is rpoE [H]

Identifier: 150003906

GI number: 150003906

Start: 1790386

End: 1790895

Strand: Direct

Name: rpoE [H]

Synonym: BVU_1339

Alternate gene names: 150003906

Gene position: 1790386-1790895 (Clockwise)

Preceding gene: 150003905

Following gene: 150003907

Centisome position: 34.68

GC content: 46.86

Gene sequence:

>510_bases
ATGCGAGAGATCAGTTTCCGAAACGATATTCTGCCCCTGAAAGACAAGCTCTACAGGTTGGCGCTTCGTATTACGCTGAA
TAGTGCTGAAGCGGAGGATGTGGTGCAGGATACGATGATCAGGGTATGGAACAAGCGGGATGAATGGCCGCAGTTTGAAT
CCATCGAGGCATATTGCCTGACCATTGCTCGTAACTTGGCAATTGACCGCAGCCAGAAGATGGAAGCGCAGAATTTGCAA
CTGACCTCTGAAGTGCGGGAGATGCCTGATACATTGACGCCTTATGACCGGTTGGCGCAGAACGAACAAATACAGTTGGT
TCACCGTCTGGTCAATGAGCTTCCCGAAAGACAGCGTACAACTATGCAGTTGAGGGATGTGGAAGGAAAGAGTTATAAAG
AGATTGCAGATATTCTGCAGATTACGGAAGAACAGGTGAAAGTAACCCTTTTCCGTGCCCGGCAGAAGATAAAACAAAGA
TACACTGAAATAGAGGATTATGGATTATAA

Upstream 100 bases:

>100_bases
CATTAATGAAGGAAGTGGAACCGTAATCAAAAAATAATTCAAAAAAAACAGGCGGGTGAGTGTAACTTTAGTGTAACTCA
CCCGTCATTATTACAGAGCA

Downstream 100 bases:

>100_bases
ATATATTGAACAGCTTTTGGAACGTTATTGGAATTGCGAAACTTCATTGGAAGAAGAGCAAATACTACGTTCATTCTTTC
GTCAGAAGGAAGTGCCTGCT

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MREISFRNDILPLKDKLYRLALRITLNSAEAEDVVQDTMIRVWNKRDEWPQFESIEAYCLTIARNLAIDRSQKMEAQNLQ
LTSEVREMPDTLTPYDRLAQNEQIQLVHRLVNELPERQRTTMQLRDVEGKSYKEIADILQITEEQVKVTLFRARQKIKQR
YTEIEDYGL

Sequences:

>Translated_169_residues
MREISFRNDILPLKDKLYRLALRITLNSAEAEDVVQDTMIRVWNKRDEWPQFESIEAYCLTIARNLAIDRSQKMEAQNLQ
LTSEVREMPDTLTPYDRLAQNEQIQLVHRLVNELPERQRTTMQLRDVEGKSYKEIADILQITEEQVKVTLFRARQKIKQR
YTEIEDYGL
>Mature_169_residues
MREISFRNDILPLKDKLYRLALRITLNSAEAEDVVQDTMIRVWNKRDEWPQFESIEAYCLTIARNLAIDRSQKMEAQNLQ
LTSEVREMPDTLTPYDRLAQNEQIQLVHRLVNELPERQRTTMQLRDVEGKSYKEIADILQITEEQVKVTLFRARQKIKQR
YTEIEDYGL

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20157; Mature: 20157

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: PS00228 TUBULIN_B_AUTOREG ; PS00237 G_PROTEIN_RECEP_F1_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREISFRNDILPLKDKLYRLALRITLNSAEAEDVVQDTMIRVWNKRDEWPQFESIEAYCL
CCCCCCCCCCCHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
TIARNLAIDRSQKMEAQNLQLTSEVREMPDTLTPYDRLAQNEQIQLVHRLVNELPERQRT
HHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHH
TMQLRDVEGKSYKEIADILQITEEQVKVTLFRARQKIKQRYTEIEDYGL
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MREISFRNDILPLKDKLYRLALRITLNSAEAEDVVQDTMIRVWNKRDEWPQFESIEAYCL
CCCCCCCCCCCHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
TIARNLAIDRSQKMEAQNLQLTSEVREMPDTLTPYDRLAQNEQIQLVHRLVNELPERQRT
HHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHH
TMQLRDVEGKSYKEIADILQITEEQVKVTLFRARQKIKQRYTEIEDYGL
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]