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The map label for this gene is dapB [H]

Identifier: 150003825

GI number: 150003825

Start: 1687676

End: 1688431

Strand: Direct

Name: dapB [H]

Synonym: BVU_1257

Alternate gene names: 150003825

Gene position: 1687676-1688431 (Clockwise)

Preceding gene: 150003823

Following gene: 150003826

Centisome position: 32.69

GC content: 43.39

Gene sequence:

>756_bases
ATGAAAATAGCATTAATAGGATACGGAAAGATGGGCAAGGAGATTGAAAAGGTTGCAGTTGCCCGCGGACATGAGATTGT
GAGTATTATAGATGTTGATAATCAAGATGATTTTAATTCGGAAGCATTTAAATCAGCAGATGTGGCTATTGAGTTTACTA
ACCCGATGGTGGCATATGATAACTATATGAAAACTTTTGCTGCCGGTGTCAAATTGGTATCGGGCAGTACCGGATGGATG
GACAAACATGGTGATGAGGTGAAAGAATTATGCACGAAAGGTGGAAAAACCTTGTTCTGGTCGTCTAATTTCAGTCTGGG
TGTCGCTATATTCTCTGCTGTAAATAAATACTTGGCTAAAATAATGAATAACTTTCCCGCTTACGAGGTTTCCATGACCG
AAACTCATCATATTCATAAACTGGATGCGCCCAGCGGAACAGCCATCACGCTGGCCGAAGGAATTCTGGAAAATATGAAC
CGCAAGAGTAAATGGGTGAAAGGGACCATGGTGGCACCGGATGGAACCGTGTCGGGAACATCGGAATGTGCCGAGAATGA
GTTTCCTGTAAATTCGATCCGTGAAGGGGAGGTGTTTGGTATTCATACTATCCGCTATGACTCTGAGGCGGACAGCATCT
CAATTACCCATGATGCCAAGAATCGGAAGGGGTTTGCCTTGGGAGCTGTTTTGGCGGCGGAATATACATCCAGGCATGAA
GGGTTATTAGGAATGAGTGATTTATTTCAGTTTTAA

Upstream 100 bases:

>100_bases
TGTAATAGTTGTTCCATGTTAATGAGGTGTAAATGTTTGGCAAATGTAATGGTTTACAACGAAAAACGCTATCTTTGTGG
CTGAAATAACATTCGTAATT

Downstream 100 bases:

>100_bases
GATATGATAAGAGCAACACGTACACAGTGGATTAAGTTTGCCGTTGTTCTGGCGCTTTACCTGATATTTCTTGTCTGGTT
GAGAAGCTGGCTGGGATTGG

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR [H]

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MKIALIGYGKMGKEIEKVAVARGHEIVSIIDVDNQDDFNSEAFKSADVAIEFTNPMVAYDNYMKTFAAGVKLVSGSTGWM
DKHGDEVKELCTKGGKTLFWSSNFSLGVAIFSAVNKYLAKIMNNFPAYEVSMTETHHIHKLDAPSGTAITLAEGILENMN
RKSKWVKGTMVAPDGTVSGTSECAENEFPVNSIREGEVFGIHTIRYDSEADSISITHDAKNRKGFALGAVLAAEYTSRHE
GLLGMSDLFQF

Sequences:

>Translated_251_residues
MKIALIGYGKMGKEIEKVAVARGHEIVSIIDVDNQDDFNSEAFKSADVAIEFTNPMVAYDNYMKTFAAGVKLVSGSTGWM
DKHGDEVKELCTKGGKTLFWSSNFSLGVAIFSAVNKYLAKIMNNFPAYEVSMTETHHIHKLDAPSGTAITLAEGILENMN
RKSKWVKGTMVAPDGTVSGTSECAENEFPVNSIREGEVFGIHTIRYDSEADSISITHDAKNRKGFALGAVLAAEYTSRHE
GLLGMSDLFQF
>Mature_251_residues
MKIALIGYGKMGKEIEKVAVARGHEIVSIIDVDNQDDFNSEAFKSADVAIEFTNPMVAYDNYMKTFAAGVKLVSGSTGWM
DKHGDEVKELCTKGGKTLFWSSNFSLGVAIFSAVNKYLAKIMNNFPAYEVSMTETHHIHKLDAPSGTAITLAEGILENMN
RKSKWVKGTMVAPDGTVSGTSECAENEFPVNSIREGEVFGIHTIRYDSEADSISITHDAKNRKGFALGAVLAAEYTSRHE
GLLGMSDLFQF

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786214, Length=274, Percent_Identity=26.6423357664234, Blast_Score=86, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040 [H]

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N [H]

EC number: =1.3.1.26 [H]

Molecular weight: Translated: 27421; Mature: 27421

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIALIGYGKMGKEIEKVAVARGHEIVSIIDVDNQDDFNSEAFKSADVAIEFTNPMVAYD
CEEEEEECCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHCCCCEEEEECCCEEHHH
NYMKTFAAGVKLVSGSTGWMDKHGDEVKELCTKGGKTLFWSSNFSLGVAIFSAVNKYLAK
HHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH
IMNNFPAYEVSMTETHHIHKLDAPSGTAITLAEGILENMNRKSKWVKGTMVAPDGTVSGT
HHHCCCCEEEEECCCCCEEEECCCCCCEEHHHHHHHHHCCHHHHHEEEEEECCCCCCCCC
SECAENEFPVNSIREGEVFGIHTIRYDSEADSISITHDAKNRKGFALGAVLAAEYTSRHE
HHHHCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHC
GLLGMSDLFQF
CCCCHHHHHCC
>Mature Secondary Structure
MKIALIGYGKMGKEIEKVAVARGHEIVSIIDVDNQDDFNSEAFKSADVAIEFTNPMVAYD
CEEEEEECCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHCCCCEEEEECCCEEHHH
NYMKTFAAGVKLVSGSTGWMDKHGDEVKELCTKGGKTLFWSSNFSLGVAIFSAVNKYLAK
HHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH
IMNNFPAYEVSMTETHHIHKLDAPSGTAITLAEGILENMNRKSKWVKGTMVAPDGTVSGT
HHHCCCCEEEEECCCCCEEEECCCCCCEEHHHHHHHHHCCHHHHHEEEEEECCCCCCCCC
SECAENEFPVNSIREGEVFGIHTIRYDSEADSISITHDAKNRKGFALGAVLAAEYTSRHE
HHHHCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHC
GLLGMSDLFQF
CCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA