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The map label for this gene is 150003785

Identifier: 150003785

GI number: 150003785

Start: 1638353

End: 1638769

Strand: Reverse

Name: 150003785

Synonym: BVU_1217

Alternate gene names: NA

Gene position: 1638769-1638353 (Counterclockwise)

Preceding gene: 150003786

Following gene: 150003784

Centisome position: 31.74

GC content: 45.56

Gene sequence:

>417_bases
ATGATAAGTTATCAAACCGAAGGGGTAAAAATGCCCGATATCAAAAAGAAAGAAACCACCGGATGGATTAAAGAAGTAGC
CGCCTGCTATGGAAAAAGAGTGGGAGAAATCGCTTACATCTTCTGTTCGGACGATAAAATTCTGGAAGTGAACCGACAGT
ATCTGCAACATGATTATTACACGGATATCATCACTTTCGACTATTGTGAAGGCGACCGTATTTCCGGCGACTTATTCATC
AGCTTGGATACTGTCCGCAGCAATGCAGAACAATTTGAGCAACCCTACGACCGCGAGCTTCACCGGGTGATTATTCATGG
TATCCTGCACTTGTGCGGCATCAACGACAAAGGCCCCGGTGAACGGGAGATTATGGAAGCCGCCGAAAACAAAGCGCTGG
CATTGATTTCCCTATAA

Upstream 100 bases:

>100_bases
CCGATGCGGCAGGGGTCATTGCAGCTATTCTTATCTGTTATCTTTTCTTCGGCTGAAATACTTTCCTTATCTTTGTACAT
TATAAAAAAATAATCAGCCT

Downstream 100 bases:

>100_bases
CAGGACATACAAGGCGGAACAACCTATAAAAGCTACGGGCATAGTTCGCAGGAATGATTGCCCGTAACCTTTTAAAGACA
TGCCCATAATTAGGAAAACT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MISYQTEGVKMPDIKKKETTGWIKEVAACYGKRVGEIAYIFCSDDKILEVNRQYLQHDYYTDIITFDYCEGDRISGDLFI
SLDTVRSNAEQFEQPYDRELHRVIIHGILHLCGINDKGPGEREIMEAAENKALALISL

Sequences:

>Translated_138_residues
MISYQTEGVKMPDIKKKETTGWIKEVAACYGKRVGEIAYIFCSDDKILEVNRQYLQHDYYTDIITFDYCEGDRISGDLFI
SLDTVRSNAEQFEQPYDRELHRVIIHGILHLCGINDKGPGEREIMEAAENKALALISL
>Mature_138_residues
MISYQTEGVKMPDIKKKETTGWIKEVAACYGKRVGEIAYIFCSDDKILEVNRQYLQHDYYTDIITFDYCEGDRISGDLFI
SLDTVRSNAEQFEQPYDRELHRVIIHGILHLCGINDKGPGEREIMEAAENKALALISL

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_BACV8 (A6KZP3)

Other databases:

- EMBL:   CP000139
- RefSeq:   YP_001298529.1
- ProteinModelPortal:   A6KZP3
- SMR:   A6KZP3
- STRING:   A6KZP3
- GeneID:   5302183
- GenomeReviews:   CP000139_GR
- KEGG:   bvu:BVU_1217
- NMPDR:   fig|435590.6.peg.1148
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   VIIHGIL
- ProtClustDB:   CLSK913607
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 15838; Mature: 15838

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISYQTEGVKMPDIKKKETTGWIKEVAACYGKRVGEIAYIFCSDDKILEVNRQYLQHDYY
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEHHHHHHHHHHHH
TDIITFDYCEGDRISGDLFISLDTVRSNAEQFEQPYDRELHRVIIHGILHLCGINDKGPG
HCEEEEECCCCCCCCCEEEEEEHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCC
EREIMEAAENKALALISL
HHHHHHHHCCCEEEEEEC
>Mature Secondary Structure
MISYQTEGVKMPDIKKKETTGWIKEVAACYGKRVGEIAYIFCSDDKILEVNRQYLQHDYY
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEHHHHHHHHHHHH
TDIITFDYCEGDRISGDLFISLDTVRSNAEQFEQPYDRELHRVIIHGILHLCGINDKGPG
HCEEEEECCCCCCCCCEEEEEEHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCC
EREIMEAAENKALALISL
HHHHHHHHCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA