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The map label for this gene is yabD [H]

Identifier: 150003759

GI number: 150003759

Start: 1603733

End: 1604362

Strand: Direct

Name: yabD [H]

Synonym: BVU_1190

Alternate gene names: 150003759

Gene position: 1603733-1604362 (Clockwise)

Preceding gene: 150003758

Following gene: 150003760

Centisome position: 31.06

GC content: 45.08

Gene sequence:

>630_bases
ATGTTGCTGGATATTCATACGCATCGCAATGCTGCTGTACCGGGAGAATGCATTTTCAATGTAGAGCCTGCATGGTTTGA
ACCTGTGGAAGGGTGTTATTATTCTGTAGGCATTCATCCGTGGAAAGTTTTGGAAGCTGGTCCGGAAGATTGGACAACGT
TGGAAAAGGCGGTCTGTCATCCCTCTGTTCTGGCGATAGGAGAGGCGGGTTTGGACCGTTTGGGGCCGGCAGATATTCTG
TTGCAAAAAGAGGTGTTTGTCCGACAAATTTTATTGAGCGAGTCAGTAGGAAAACCGTTGGTTATTCATTGTGTGAAGGC
GTTTAATGAACTGATTGAACTGAAAAAGAAGTATCGTCCGCAGATGCCTTGGGTGGTACATGGTTTCCGTAATAATCTGC
ATATTGCCTGCCAGCTGATGCAGGAAAACATTTATTTTTCGTTGGGAGAAAGATATCAGCCTGATGTGTTGCGGTACGTG
CCTTTAGAATGTTTATTGGCCGAAACGGATGAGAGCACGCAGGATATCCGTATGGTGATAGGACGGATGGCGGAAACGAA
GAATGTGGAAGTTTCCTTTCTGTGCGATAGGATAGATGAAAATGCACGGAAAATCTTTTTTCGGCAATAA

Upstream 100 bases:

>100_bases
GTCCTTTCAAGGGATTGTATCTGGCTGTCCGCCGGATATTGCGTTGCCATCCGTGGGGCGGGTCGGGCTATGATCCGGTT
CCGTAAAATCTGTTGTCCTT

Downstream 100 bases:

>100_bases
GAGTTGTTTCTTCAGATAAAGAGTCGTACTTTTGTAGCATTTAAAGTATAAATCAAACATTTAAATAGATAATCATTCGA
TGAATTTTGTAGAAGAATTA

Product: TatD-related DNase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MLLDIHTHRNAAVPGECIFNVEPAWFEPVEGCYYSVGIHPWKVLEAGPEDWTTLEKAVCHPSVLAIGEAGLDRLGPADIL
LQKEVFVRQILLSESVGKPLVIHCVKAFNELIELKKKYRPQMPWVVHGFRNNLHIACQLMQENIYFSLGERYQPDVLRYV
PLECLLAETDESTQDIRMVIGRMAETKNVEVSFLCDRIDENARKIFFRQ

Sequences:

>Translated_209_residues
MLLDIHTHRNAAVPGECIFNVEPAWFEPVEGCYYSVGIHPWKVLEAGPEDWTTLEKAVCHPSVLAIGEAGLDRLGPADIL
LQKEVFVRQILLSESVGKPLVIHCVKAFNELIELKKKYRPQMPWVVHGFRNNLHIACQLMQENIYFSLGERYQPDVLRYV
PLECLLAETDESTQDIRMVIGRMAETKNVEVSFLCDRIDENARKIFFRQ
>Mature_209_residues
MLLDIHTHRNAAVPGECIFNVEPAWFEPVEGCYYSVGIHPWKVLEAGPEDWTTLEKAVCHPSVLAIGEAGLDRLGPADIL
LQKEVFVRQILLSESVGKPLVIHCVKAFNELIELKKKYRPQMPWVVHGFRNNLHIACQLMQENIYFSLGERYQPDVLRYV
PLECLLAETDESTQDIRMVIGRMAETKNVEVSFLCDRIDENARKIFFRQ

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.- [C]

Molecular weight: Translated: 24007; Mature: 24007

Theoretical pI: Translated: 5.60; Mature: 5.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLDIHTHRNAAVPGECIFNVEPAWFEPVEGCYYSVGIHPWKVLEAGPEDWTTLEKAVCH
CEEEEECCCCCCCCCCEEEECCCCCCCCCCCEEEECCCCCEEEEECCCCHHHHHHHHHCC
PSVLAIGEAGLDRLGPADILLQKEVFVRQILLSESVGKPLVIHCVKAFNELIELKKKYRP
CHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
QMPWVVHGFRNNLHIACQLMQENIYFSLGERYQPDVLRYVPLECLLAETDESTQDIRMVI
CCCEEEECCCCCHHHHHHHHHHHHHEECCCCCCCCHHHHCCHHHEEECCCCCHHHHHHHH
GRMAETKNVEVSFLCDRIDENARKIFFRQ
HHHHCCCCCCCEEHHHHHCCHHHHEECCC
>Mature Secondary Structure
MLLDIHTHRNAAVPGECIFNVEPAWFEPVEGCYYSVGIHPWKVLEAGPEDWTTLEKAVCH
CEEEEECCCCCCCCCCEEEECCCCCCCCCCCEEEECCCCCEEEEECCCCHHHHHHHHHCC
PSVLAIGEAGLDRLGPADILLQKEVFVRQILLSESVGKPLVIHCVKAFNELIELKKKYRP
CHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
QMPWVVHGFRNNLHIACQLMQENIYFSLGERYQPDVLRYVPLECLLAETDESTQDIRMVI
CCCEEEECCCCCHHHHHHHHHHHHHEECCCCCCCCHHHHCCHHHEEECCCCCHHHHHHHH
GRMAETKNVEVSFLCDRIDENARKIFFRQ
HHHHCCCCCCCEEHHHHHCCHHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]