Click here to switch to the map view.

The map label for this gene is rpoE [C]

Identifier: 150003724

GI number: 150003724

Start: 1564125

End: 1564712

Strand: Direct

Name: rpoE [C]

Synonym: BVU_1155

Alternate gene names: 150003724

Gene position: 1564125-1564712 (Clockwise)

Preceding gene: 150003722

Following gene: 150003725

Centisome position: 30.29

GC content: 33.67

Gene sequence:

>588_bases
ATGGATGCAAGTATAGTAGATAAAGATTTGATTGAAAGAATAAACAAAGGAGAAGAAAAAGCTTTTGAGGTTTTATATAA
TAGCTATTTTGTCTATCTCTGTGCTTGTGCTAATTCTTATATCTTTAACCCTGTGGAAGCGCAAGATATAGTTAATGAAA
CTTTTGCTAAAATATGGTATAGGCGTGGTGAGTTATCTTTTCCTATTCATGCTTATTTGATACGTGCTATTCAGAACGGG
TGTTTGAATTACCTCCGTTCGCTTCACAGCCGTGAAAGAATTATAGATGAATACCGTGAAGCATTACTTGAGTATCAAGA
AGAATTTTGTGCTTCCGAGTGTTCGCCTTTGCAAGAAATGGAATTAGCTGATTTGGAAAAATCAGTCCAAAATATAGTGT
CTTCCTTGCCTGATAAATGCAGGTTCATTTTTGAGCAATATCTTTATTCCAATCTGACTCCTCAAGAGATTGCAGATAAA
AATAATATTTCAGTCAATACAGTCAGAGTACATGTAAAAAATGCCATGGATAAAATAAGAGAAAAGGTGGGATCTAGAGT
AGGGATTCTATTATTTTTTCTTTTCTAA

Upstream 100 bases:

>100_bases
TTCAGTTGATTATTACTAGAGTTTTTTAATAAGAAATAGTTTTATTGGCATGATGTTTTTAAGAAATGCTATATTTGCAA
TATTAATAGTCTTAATAAAG

Downstream 100 bases:

>100_bases
AAAAAGAATGAAAAAAATCTGTTTTTGGCTTAAATGTTTTGTCTGTTGCTTGTGTATTATCTATAGTAGATAATTCCAAA
GATATAAAATGAACAGCCAA

Product: putative ECF sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; Transcriptional Regulator LuxR Family; RNA Polymerase Sigma Factor Sigma-70 Family; ECF-Type RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor RpoE; ECF Sigma Factor; RNA Polymerase Sigma-W Factor; RNA Polymerase ECF Sigma Factor; ECF-Type Sigma Factor; RNA Polymerase Sigma-H Factor

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MDASIVDKDLIERINKGEEKAFEVLYNSYFVYLCACANSYIFNPVEAQDIVNETFAKIWYRRGELSFPIHAYLIRAIQNG
CLNYLRSLHSRERIIDEYREALLEYQEEFCASECSPLQEMELADLEKSVQNIVSSLPDKCRFIFEQYLYSNLTPQEIADK
NNISVNTVRVHVKNAMDKIREKVGSRVGILLFFLF

Sequences:

>Translated_195_residues
MDASIVDKDLIERINKGEEKAFEVLYNSYFVYLCACANSYIFNPVEAQDIVNETFAKIWYRRGELSFPIHAYLIRAIQNG
CLNYLRSLHSRERIIDEYREALLEYQEEFCASECSPLQEMELADLEKSVQNIVSSLPDKCRFIFEQYLYSNLTPQEIADK
NNISVNTVRVHVKNAMDKIREKVGSRVGILLFFLF
>Mature_195_residues
MDASIVDKDLIERINKGEEKAFEVLYNSYFVYLCACANSYIFNPVEAQDIVNETFAKIWYRRGELSFPIHAYLIRAIQNG
CLNYLRSLHSRERIIDEYREALLEYQEEFCASECSPLQEMELADLEKSVQNIVSSLPDKCRFIFEQYLYSNLTPQEIADK
NNISVNTVRVHVKNAMDKIREKVGSRVGILLFFLF

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22776; Mature: 22776

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDASIVDKDLIERINKGEEKAFEVLYNSYFVYLCACANSYIFNPVEAQDIVNETFAKIWY
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
RRGELSFPIHAYLIRAIQNGCLNYLRSLHSRERIIDEYREALLEYQEEFCASECSPLQEM
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
ELADLEKSVQNIVSSLPDKCRFIFEQYLYSNLTPQEIADKNNISVNTVRVHVKNAMDKIR
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHH
EKVGSRVGILLFFLF
HHHCCHHHHHHHHHC
>Mature Secondary Structure
MDASIVDKDLIERINKGEEKAFEVLYNSYFVYLCACANSYIFNPVEAQDIVNETFAKIWY
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
RRGELSFPIHAYLIRAIQNGCLNYLRSLHSRERIIDEYREALLEYQEEFCASECSPLQEM
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
ELADLEKSVQNIVSSLPDKCRFIFEQYLYSNLTPQEIADKNNISVNTVRVHVKNAMDKIR
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHH
EKVGSRVGILLFFLF
HHHCCHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA