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The map label for this gene is xynD [H]

Identifier: 150003692

GI number: 150003692

Start: 1500018

End: 1502420

Strand: Reverse

Name: xynD [H]

Synonym: BVU_1123

Alternate gene names: 150003692

Gene position: 1502420-1500018 (Counterclockwise)

Preceding gene: 150003693

Following gene: 150003691

Centisome position: 29.1

GC content: 46.48

Gene sequence:

>2403_bases
ATGAATAAGATACGATTGGTTGTTGCTTCCTTATTGTTGGGAGCTGCTACAGGCTTTGCTCAGAAGCCTTTTAATGCTTC
GGGTACGGGGAATCCCATTATTCCCGGATATTTTGCCGATCCCACGGTGAAGAAGTTTGGCGATACGTATTATATGTATG
CCACTACGGATGGCAGTGGAGCCGGTTTCGGTCCTGCACAGGTGTGGACCAGCAAGGATTTTGTAAACTGGACGCTGATG
CCTATGAACTGGCCGGACAGTCATTGGATATGGGCTCCTGATGTGATGAAACATACGGATGGGAATTATTATTATTTTTA
TTGTCAGCCCTGTATGATTCATTGCGGAGTCAGTGAAACACCGCGCGGTCCTTGGAAAAATATATTGGGCGAAAGTGAGG
CTGTTCTTGTACCCGACCGTTTTGTGACGAATGCCATTACATTGGACGGACAGACCTTTGTGGATGATGATGGTTCTGTA
TATTTGTATTGGGGGACTTGGGGGATTTATAAAGGTTTCGGTTGCGGGGCCGGAAAACTGGCTTCCGATATGAAGAGTTT
TACTGAAACGCGTCTGATTCCGAATACGGAAGCCACGGATTTTTTTGAAGCGCCCTTTGTGATGAAACGGAACGGTATCT
ATTATTTTATGTATTCTTCGGGTTCCTGTCACGACCACACCTATCGGGTGCAGTATGCCACTTCGGACAAGCCTATGGGG
CCGTACACCTATCAGGGATGTATTCTTGAAACCAATGCCGATGGAACAATCCATGGGCCGGGACATCATAGCATTTTGAA
AGAAGGCAATGAATATTATATGGTCTATCACCGTCATGATAATCCGCATTCCAACCGCGGATTTCATCGTCAGCTTTGTG
TGGACCGTATGGAGTTTGCCGAAGATGGAAGTATTAAACCCCTTATTCCCACTCATGACGGCATAGGTGCATTGGCATCT
TCTGTCGTGAAATCAAAAAATCTGGCATTGGGTGCTAAGGTGAGGGCTTCTTCTTTTTATGATGCCGGTTTCCGTCCCGA
ATATGCTGTAGATGATAATAACGGAACTTTATGGCGTCCTCGTGGAATGGGACAGGAGTGGATAGAAGTGGATTTGGGCG
TTGCCCGGCAAATACAAACTATCTGGACTCAATTTGAGTATGGCACACAATTTTATCAATATTTAATTGAAACTTCTGTC
GACGGCAAGCATTGGTCTGTTTTCGCTGATAAACGGAATAATCGTCTGGCAGGCAGCCCGATGGTCGATTTTGGCAAAGT
GAAGGCTCGTTATGTCCGTCTGAGCTTTACCGGAGGACAGAAGAACGGATTTGGCGGGGCGGTCTGGAACTTGAAAATCT
TTGATGGGGTGGAAGCATCGGCTCCGCAACAATGGCTGGGACTTACCGCTGCCGATTGGAATGGTCGTGAATGGCAGAAC
AATGAAGGGATGCTGGGAGGGGCTTTTACATTGAAGGAAGGTTCGGCACGCACACAGCGCATCGGTGGGCGTGATGCGTT
GGTACTGGAACCGGGAACTACGTTGGAGTATCGCCATCCGTTACTCTCTTCGTCCAAAGAGCATACGGTTAGTGGGTTGG
TTTACAAGTCAGGTAAATGGCAGAGTTATGAAGCGGAGTCGTGTCTTTCATCAGGAGCGATTGCGCTGCATAGTTCCACC
GAACCTTTGGTCATTACCAATTTCCGTTACTACAATTGGAAGCAGGAAGCAGCGGAAAAGGCATACGATGCGGAAACGGA
TATCGTGCGTCTGCCTGTAGCCGATCAGCAGAAACATGGGTTGGTGGTCAGTCTTTCTGCTGATGATTTTGCAGTGAACG
ATACGGTTCCTTATCTGGAAAACCGAGGAGTAAAAGGTTATTTTGAAGCCCGGAAATTACCTCTCGTTGTGAAAGAAGTG
AAAGGGAAAAAGGCATTTCATTTTGAGGGTACTCAGGTCTATACTTCCAGTTTTATGCTTCCTGCCACTTTGCAGGATAA
TGCTCCTTATACCTTGGAGGCGTGGGTACTGAATGATTCCATTAGTGAAAATGAATGTGTGGCCGATTTTACTACCTCGC
ATGATGAATTGGAGAAAATCATGTTGGTCAACGGCACGGAGCCTCGTTGTGGAGTAATCAATCACTATGGCTGGTATGAA
GATGCAGGATATAAGGACATGAAGGAATTGGCAGGAAAGTGGCAGCACATCTATATCTGCTTTGATGGGCGGATGGAACA
GGTTTATGTCAATGGAAAATTAGTCAGTGAGAAAGATATCCAGTTGCTGGTGAAACCGTCACAATTCATCACATTGGGAC
GCAATGCCGAAGGAGACTGGCCCTTTACCGGTTATCTGCACTCATTGAAATTATGGGATGAATATTTGCCGTTGAAAGAG
TGA

Upstream 100 bases:

>100_bases
TCGGTTGTTGCAGGAATATTTTTATGAGATAGAAATTCCCATTCATAATGTGGTGCATGAATAAGCGTCGCAGGGACAAA
TAGAATTTTGCTATATAGAG

Downstream 100 bases:

>100_bases
TTCACCCTTTTCCTATGACCGGAATATGTATTTTTGCAAAAACTATGATAAACAATTAAATGATAGAACCATGAAAAAAT
TTTTAGTCACTGCTCTGTTG

Product: glycoside hydrolase family protein

Products: NA

Alternate protein names: AXH; AXH-m2,3; AXH-m23; Alpha-L-arabinofuranosidase; AF [H]

Number of amino acids: Translated: 800; Mature: 800

Protein sequence:

>800_residues
MNKIRLVVASLLLGAATGFAQKPFNASGTGNPIIPGYFADPTVKKFGDTYYMYATTDGSGAGFGPAQVWTSKDFVNWTLM
PMNWPDSHWIWAPDVMKHTDGNYYYFYCQPCMIHCGVSETPRGPWKNILGESEAVLVPDRFVTNAITLDGQTFVDDDGSV
YLYWGTWGIYKGFGCGAGKLASDMKSFTETRLIPNTEATDFFEAPFVMKRNGIYYFMYSSGSCHDHTYRVQYATSDKPMG
PYTYQGCILETNADGTIHGPGHHSILKEGNEYYMVYHRHDNPHSNRGFHRQLCVDRMEFAEDGSIKPLIPTHDGIGALAS
SVVKSKNLALGAKVRASSFYDAGFRPEYAVDDNNGTLWRPRGMGQEWIEVDLGVARQIQTIWTQFEYGTQFYQYLIETSV
DGKHWSVFADKRNNRLAGSPMVDFGKVKARYVRLSFTGGQKNGFGGAVWNLKIFDGVEASAPQQWLGLTAADWNGREWQN
NEGMLGGAFTLKEGSARTQRIGGRDALVLEPGTTLEYRHPLLSSSKEHTVSGLVYKSGKWQSYEAESCLSSGAIALHSST
EPLVITNFRYYNWKQEAAEKAYDAETDIVRLPVADQQKHGLVVSLSADDFAVNDTVPYLENRGVKGYFEARKLPLVVKEV
KGKKAFHFEGTQVYTSSFMLPATLQDNAPYTLEAWVLNDSISENECVADFTTSHDELEKIMLVNGTEPRCGVINHYGWYE
DAGYKDMKELAGKWQHIYICFDGRMEQVYVNGKLVSEKDIQLLVKPSQFITLGRNAEGDWPFTGYLHSLKLWDEYLPLKE

Sequences:

>Translated_800_residues
MNKIRLVVASLLLGAATGFAQKPFNASGTGNPIIPGYFADPTVKKFGDTYYMYATTDGSGAGFGPAQVWTSKDFVNWTLM
PMNWPDSHWIWAPDVMKHTDGNYYYFYCQPCMIHCGVSETPRGPWKNILGESEAVLVPDRFVTNAITLDGQTFVDDDGSV
YLYWGTWGIYKGFGCGAGKLASDMKSFTETRLIPNTEATDFFEAPFVMKRNGIYYFMYSSGSCHDHTYRVQYATSDKPMG
PYTYQGCILETNADGTIHGPGHHSILKEGNEYYMVYHRHDNPHSNRGFHRQLCVDRMEFAEDGSIKPLIPTHDGIGALAS
SVVKSKNLALGAKVRASSFYDAGFRPEYAVDDNNGTLWRPRGMGQEWIEVDLGVARQIQTIWTQFEYGTQFYQYLIETSV
DGKHWSVFADKRNNRLAGSPMVDFGKVKARYVRLSFTGGQKNGFGGAVWNLKIFDGVEASAPQQWLGLTAADWNGREWQN
NEGMLGGAFTLKEGSARTQRIGGRDALVLEPGTTLEYRHPLLSSSKEHTVSGLVYKSGKWQSYEAESCLSSGAIALHSST
EPLVITNFRYYNWKQEAAEKAYDAETDIVRLPVADQQKHGLVVSLSADDFAVNDTVPYLENRGVKGYFEARKLPLVVKEV
KGKKAFHFEGTQVYTSSFMLPATLQDNAPYTLEAWVLNDSISENECVADFTTSHDELEKIMLVNGTEPRCGVINHYGWYE
DAGYKDMKELAGKWQHIYICFDGRMEQVYVNGKLVSEKDIQLLVKPSQFITLGRNAEGDWPFTGYLHSLKLWDEYLPLKE
>Mature_800_residues
MNKIRLVVASLLLGAATGFAQKPFNASGTGNPIIPGYFADPTVKKFGDTYYMYATTDGSGAGFGPAQVWTSKDFVNWTLM
PMNWPDSHWIWAPDVMKHTDGNYYYFYCQPCMIHCGVSETPRGPWKNILGESEAVLVPDRFVTNAITLDGQTFVDDDGSV
YLYWGTWGIYKGFGCGAGKLASDMKSFTETRLIPNTEATDFFEAPFVMKRNGIYYFMYSSGSCHDHTYRVQYATSDKPMG
PYTYQGCILETNADGTIHGPGHHSILKEGNEYYMVYHRHDNPHSNRGFHRQLCVDRMEFAEDGSIKPLIPTHDGIGALAS
SVVKSKNLALGAKVRASSFYDAGFRPEYAVDDNNGTLWRPRGMGQEWIEVDLGVARQIQTIWTQFEYGTQFYQYLIETSV
DGKHWSVFADKRNNRLAGSPMVDFGKVKARYVRLSFTGGQKNGFGGAVWNLKIFDGVEASAPQQWLGLTAADWNGREWQN
NEGMLGGAFTLKEGSARTQRIGGRDALVLEPGTTLEYRHPLLSSSKEHTVSGLVYKSGKWQSYEAESCLSSGAIALHSST
EPLVITNFRYYNWKQEAAEKAYDAETDIVRLPVADQQKHGLVVSLSADDFAVNDTVPYLENRGVKGYFEARKLPLVVKEV
KGKKAFHFEGTQVYTSSFMLPATLQDNAPYTLEAWVLNDSISENECVADFTTSHDELEKIMLVNGTEPRCGVINHYGWYE
DAGYKDMKELAGKWQHIYICFDGRMEQVYVNGKLVSEKDIQLLVKPSQFITLGRNAEGDWPFTGYLHSLKLWDEYLPLKE

Specific function: Cleaves arabinose units from O-2- or O-3-monosubstituted xylose residues, thereby assisting in arabinoxylan (AX) and short- chain arabinoxylo-oligosaccharide (AXOS) degradation. Preferres wheat flour xylan over oat spelt xylan as substrate. Does not displ

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBM6 (carbohydrate binding type-6) domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005084
- InterPro:   IPR006584
- InterPro:   IPR008979
- InterPro:   IPR006710 [H]

Pfam domain/function: PF03422 CBM_6; PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.55 [H]

Molecular weight: Translated: 89862; Mature: 89862

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: PS50022 FA58C_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKIRLVVASLLLGAATGFAQKPFNASGTGNPIIPGYFADPTVKKFGDTYYMYATTDGSG
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCEEEEEEEECCCC
AGFGPAQVWTSKDFVNWTLMPMNWPDSHWIWAPDVMKHTDGNYYYFYCQPCMIHCGVSET
CCCCHHHEECCCCCEEEEEEECCCCCCCEEECCHHHHCCCCCEEEEEEEEEEEEECCCCC
PRGPWKNILGESEAVLVPDRFVTNAITLDGQTFVDDDGSVYLYWGTWGIYKGFGCGAGKL
CCCHHHHHCCCCCEEEECCHHEEEEEEECCCEEECCCCCEEEEEECCCCCCCCCCCCHHH
ASDMKSFTETRLIPNTEATDFFEAPFVMKRNGIYYFMYSSGSCHDHTYRVQYATSDKPMG
HHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCEEEEEECCCCCCCCEEEEEEECCCCCCC
PYTYQGCILETNADGTIHGPGHHSILKEGNEYYMVYHRHDNPHSNRGFHRQLCVDRMEFA
CEEECCEEEEECCCCEEECCCCHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHC
EDGSIKPLIPTHDGIGALASSVVKSKNLALGAKVRASSFYDAGFRPEYAVDDNNGTLWRP
CCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCEECCCCCCCEEEECCCCCEECC
RGMGQEWIEVDLGVARQIQTIWTQFEYGTQFYQYLIETSVDGKHWSVFADKRNNRLAGSP
CCCCHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEECCCC
MVDFGKVKARYVRLSFTGGQKNGFGGAVWNLKIFDGVEASAPQQWLGLTAADWNGREWQN
CCCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCHHHHEEEEECCCCCCCCC
NEGMLGGAFTLKEGSARTQRIGGRDALVLEPGTTLEYRHPLLSSSKEHTVSGLVYKSGKW
CCCEEEEEEEECCCCCHHHHCCCCEEEEECCCCCEEECCHHHCCCCCCEEEEEEEECCCC
QSYEAESCLSSGAIALHSSTEPLVITNFRYYNWKQEAAEKAYDAETDIVRLPVADQQKHG
CCCCHHHHHCCCEEEEECCCCCEEEEEEEEECCHHHHHHHHCCCCCCEEEECCCCCCCCC
LVVSLSADDFAVNDTVPYLENRGVKGYFEARKLPLVVKEVKGKKAFHFEGTQVYTSSFML
EEEEECCCCEEECCCCCHHHCCCCCEEEHHCCCCEEEEECCCCEEEEECCCEEEECCEEE
PATLQDNAPYTLEAWVLNDSISENECVADFTTSHDELEKIMLVNGTEPRCGVINHYGWYE
EEEECCCCCEEEEEEEECCCCCCCCEEEECCCCHHHCEEEEEEECCCCCCCEECCCCCCC
DAGYKDMKELAGKWQHIYICFDGRMEQVYVNGKLVSEKDIQLLVKPSQFITLGRNAEGDW
CCCHHHHHHHCCCEEEEEEEEECCEEEEEECCEEECCCCEEEEECCCCEEEECCCCCCCC
PFTGYLHSLKLWDEYLPLKE
CHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNKIRLVVASLLLGAATGFAQKPFNASGTGNPIIPGYFADPTVKKFGDTYYMYATTDGSG
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCEEEEEEEECCCC
AGFGPAQVWTSKDFVNWTLMPMNWPDSHWIWAPDVMKHTDGNYYYFYCQPCMIHCGVSET
CCCCHHHEECCCCCEEEEEEECCCCCCCEEECCHHHHCCCCCEEEEEEEEEEEEECCCCC
PRGPWKNILGESEAVLVPDRFVTNAITLDGQTFVDDDGSVYLYWGTWGIYKGFGCGAGKL
CCCHHHHHCCCCCEEEECCHHEEEEEEECCCEEECCCCCEEEEEECCCCCCCCCCCCHHH
ASDMKSFTETRLIPNTEATDFFEAPFVMKRNGIYYFMYSSGSCHDHTYRVQYATSDKPMG
HHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCEEEEEECCCCCCCCEEEEEEECCCCCCC
PYTYQGCILETNADGTIHGPGHHSILKEGNEYYMVYHRHDNPHSNRGFHRQLCVDRMEFA
CEEECCEEEEECCCCEEECCCCHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHC
EDGSIKPLIPTHDGIGALASSVVKSKNLALGAKVRASSFYDAGFRPEYAVDDNNGTLWRP
CCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCEECCCCCCCEEEECCCCCEECC
RGMGQEWIEVDLGVARQIQTIWTQFEYGTQFYQYLIETSVDGKHWSVFADKRNNRLAGSP
CCCCHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEECCCC
MVDFGKVKARYVRLSFTGGQKNGFGGAVWNLKIFDGVEASAPQQWLGLTAADWNGREWQN
CCCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCHHHHEEEEECCCCCCCCC
NEGMLGGAFTLKEGSARTQRIGGRDALVLEPGTTLEYRHPLLSSSKEHTVSGLVYKSGKW
CCCEEEEEEEECCCCCHHHHCCCCEEEEECCCCCEEECCHHHCCCCCCEEEEEEEECCCC
QSYEAESCLSSGAIALHSSTEPLVITNFRYYNWKQEAAEKAYDAETDIVRLPVADQQKHG
CCCCHHHHHCCCEEEEECCCCCEEEEEEEEECCHHHHHHHHCCCCCCEEEECCCCCCCCC
LVVSLSADDFAVNDTVPYLENRGVKGYFEARKLPLVVKEVKGKKAFHFEGTQVYTSSFML
EEEEECCCCEEECCCCCHHHCCCCCEEEHHCCCCEEEEECCCCEEEEECCCEEEECCEEE
PATLQDNAPYTLEAWVLNDSISENECVADFTTSHDELEKIMLVNGTEPRCGVINHYGWYE
EEEECCCCCEEEEEEEECCCCCCCCEEEECCCCHHHCEEEEEEECCCCCCCEECCCCCCC
DAGYKDMKELAGKWQHIYICFDGRMEQVYVNGKLVSEKDIQLLVKPSQFITLGRNAEGDW
CCCHHHHHHHCCCEEEEEEEEECCEEEEEECCEEECCCCEEEEECCCCEEEECCCCCCCC
PFTGYLHSLKLWDEYLPLKE
CHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1938968 [H]