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The map label for this gene is ycbY [C]

Identifier: 150003662

GI number: 150003662

Start: 1454238

End: 1455686

Strand: Direct

Name: ycbY [C]

Synonym: BVU_1093

Alternate gene names: 150003662

Gene position: 1454238-1455686 (Clockwise)

Preceding gene: 150003661

Following gene: 150003663

Centisome position: 28.17

GC content: 46.65

Gene sequence:

>1449_bases
ATGAAGGAAGAATTCGAGCTAATCGCCAAGACTTTCCAGGGACTGGAAGAAGTACTGGCAAAAGAACTCACCGAGCTGGG
AGCCAGCAATATAGAAGTAGGAAGACGCATGGTAGCCTTTACGGGCGATAAAGAAATGATGTATAGGGCAAACTTCTGCC
TGCGTACTGCCATCCGCATCCTGAAACCCATCAAACATTTTGAGGCGAAGAATGCCGATGAAGTTTACGAAGCTATCAAG
GCCATTGCGTGGGAAGACTTCTTGGATAAAGATAAAAGTTTTGCCGTAGACGCTGTGGTTTTCTCGAACGAGTTCCGTCA
CTCCAAGTTCGTAGCCTACAAAGTAAAAGACGCCATTGTGGACTATTTCCGTGAAAAGACAGGAGAGCGCCCCTCGGTAC
GCATCAACCATCCCGATGTGGCACTGAACATCCATATAGCCGAAAATAAATGCACTCTGTCACTGGATAGTTCGGGCGAG
TCACTCCACCGCCGGGGTTATCGCCAGGAAGCCGTAGAAGCTCCTTTGAATGAGGTACTGGCAGCCGGTATGATCCTGAT
GACCGGATGGAAAGGCGAATGTGATTTGATAGACCCGATGTGCGGTTCAGGAACAATACCTATCGAAGCCGCCCTGATAG
CACGTAACATCGCTCCCGGCGTATTCCGCAAGGAGTTCGCTTTTGAAAAGTGGAACGATTTTGATCAGGAACTATTTGAC
CGCATCTACAATGACGACTCACAGGAACGTGAGTTCACACATAAGATTTTTGGATATGACAATAATCCGAAAGCAAATGA
AATTGCCACTCACAATGTGAAAGCAGCCGGACTGAGCAAGGAGATTATCTTAAAAATCCAACCGTTCCAGCAATTTGAGC
AACCCAAAGAAAAAAGCATCATCATCACCAACCCTCCTTATGGAGAACGTATCTCAACCAATGATTTGCTGGGCCTGTAT
CAAATGATAGGCGAACGTCTGAAACACTCTTTCACCGGCAATGATGCATGGGTACTAAGTTACCGTGAAGAATGTTTCGA
CCAGATTGGTTTAAAGCCTTCTATAAAAATCCCCCTGTTCAACGGTTCGTTGGAATGTGAATTCCGCAAATACCAATTAT
TCAACGGCAAATTCAAAGAATTCCGTAGTGAGAACGCCGATCAGGAATTCAAGCCCCGCCGGGAAGAAATCCGCCCGCGC
CGTAACACGGAAAAGGTAGAATATGGAGAACGCAGAGAACGTCGTAGTTTTGACAACAGACGTGAAGGACACGGAGAGTA
CAAAGGAGGAGAGCGCAGAGAAAGACGCTCTTTTGATGACAAACGTGAGGGACGTGGCGATTTCAAAAGAGGAGAACACC
GCAACTTTGGTGACAGACGTGAAGGCCGCGACAATTTCAAAAGCAGTCCCCGTAAATTTGACGACAATAAGGAAAAGACA
GAAGAATAA

Upstream 100 bases:

>100_bases
TTTGCTTCATCAAACAGATTAATTCTCTAAATAATTGATTAGCAAACAGAAAATCATTAAATTTGTCCCATCAATTGAAA
TTACGTAATTATCATTTAAG

Downstream 100 bases:

>100_bases
ACAGTTATGAGAAAATTAATCAATCTGATTGCCTTATTAATCATGGCTTCATCTGTAACATGGGCACAAGACAAGAAAAG
TTTCACACTGGAAGACTTGA

Product: putative N6-adenine-specific DNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 482; Mature: 482

Protein sequence:

>482_residues
MKEEFELIAKTFQGLEEVLAKELTELGASNIEVGRRMVAFTGDKEMMYRANFCLRTAIRILKPIKHFEAKNADEVYEAIK
AIAWEDFLDKDKSFAVDAVVFSNEFRHSKFVAYKVKDAIVDYFREKTGERPSVRINHPDVALNIHIAENKCTLSLDSSGE
SLHRRGYRQEAVEAPLNEVLAAGMILMTGWKGECDLIDPMCGSGTIPIEAALIARNIAPGVFRKEFAFEKWNDFDQELFD
RIYNDDSQEREFTHKIFGYDNNPKANEIATHNVKAAGLSKEIILKIQPFQQFEQPKEKSIIITNPPYGERISTNDLLGLY
QMIGERLKHSFTGNDAWVLSYREECFDQIGLKPSIKIPLFNGSLECEFRKYQLFNGKFKEFRSENADQEFKPRREEIRPR
RNTEKVEYGERRERRSFDNRREGHGEYKGGERRERRSFDDKREGRGDFKRGEHRNFGDRREGRDNFKSSPRKFDDNKEKT
EE

Sequences:

>Translated_482_residues
MKEEFELIAKTFQGLEEVLAKELTELGASNIEVGRRMVAFTGDKEMMYRANFCLRTAIRILKPIKHFEAKNADEVYEAIK
AIAWEDFLDKDKSFAVDAVVFSNEFRHSKFVAYKVKDAIVDYFREKTGERPSVRINHPDVALNIHIAENKCTLSLDSSGE
SLHRRGYRQEAVEAPLNEVLAAGMILMTGWKGECDLIDPMCGSGTIPIEAALIARNIAPGVFRKEFAFEKWNDFDQELFD
RIYNDDSQEREFTHKIFGYDNNPKANEIATHNVKAAGLSKEIILKIQPFQQFEQPKEKSIIITNPPYGERISTNDLLGLY
QMIGERLKHSFTGNDAWVLSYREECFDQIGLKPSIKIPLFNGSLECEFRKYQLFNGKFKEFRSENADQEFKPRREEIRPR
RNTEKVEYGERRERRSFDNRREGHGEYKGGERRERRSFDDKREGRGDFKRGEHRNFGDRREGRDNFKSSPRKFDDNKEKT
EE
>Mature_482_residues
MKEEFELIAKTFQGLEEVLAKELTELGASNIEVGRRMVAFTGDKEMMYRANFCLRTAIRILKPIKHFEAKNADEVYEAIK
AIAWEDFLDKDKSFAVDAVVFSNEFRHSKFVAYKVKDAIVDYFREKTGERPSVRINHPDVALNIHIAENKCTLSLDSSGE
SLHRRGYRQEAVEAPLNEVLAAGMILMTGWKGECDLIDPMCGSGTIPIEAALIARNIAPGVFRKEFAFEKWNDFDQELFD
RIYNDDSQEREFTHKIFGYDNNPKANEIATHNVKAAGLSKEIILKIQPFQQFEQPKEKSIIITNPPYGERISTNDLLGLY
QMIGERLKHSFTGNDAWVLSYREECFDQIGLKPSIKIPLFNGSLECEFRKYQLFNGKFKEFRSENADQEFKPRREEIRPR
RNTEKVEYGERRERRSFDNRREGHGEYKGGERRERRSFDDKREGRGDFKRGEHRNFGDRREGRDNFKSSPRKFDDNKEKT
EE

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=378, Percent_Identity=32.8042328042328, Blast_Score=215, Evalue=6e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR002296
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 56202; Mature: 56202

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: PS51165 THUMP ; PS00092 N6_MTASE ; PS01261 UPF0020

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEEFELIAKTFQGLEEVLAKELTELGASNIEVGRRMVAFTGDKEMMYRANFCLRTAIRI
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCHHHHHHHHHHHHHHHHH
LKPIKHFEAKNADEVYEAIKAIAWEDFLDKDKSFAVDAVVFSNEFRHSKFVAYKVKDAIV
HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEHEEECCCCCCCCEEEHHHHHHHH
DYFREKTGERPSVRINHPDVALNIHIAENKCTLSLDSSGESLHRRGYRQEAVEAPLNEVL
HHHHHHCCCCCCEEECCCCEEEEEEEECCEEEEEECCCCHHHHHCCCHHHHHHCCHHHHH
AAGMILMTGWKGECDLIDPMCGSGTIPIEAALIARNIAPGVFRKEFAFEKWNDFDQELFD
HHCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHH
RIYNDDSQEREFTHKIFGYDNNPKANEIATHNVKAAGLSKEIILKIQPFQQFEQPKEKSI
HHHCCCCHHHHHHHHHHCCCCCCCCCCHHHCCCHHCCCCCEEEEEECCHHHHCCCCCCEE
IITNPPYGERISTNDLLGLYQMIGERLKHSFTGNDAWVLSYREECFDQIGLKPSIKIPLF
EECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHCCCCCCEEEEEE
NGSLECEFRKYQLFNGKFKEFRSENADQEFKPRREEIRPRRNTEKVEYGERRERRSFDNR
CCCEEEEEEEHHHHCCHHHHHHCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH
REGHGEYKGGERRERRSFDDKREGRGDFKRGEHRNFGDRREGRDNFKSSPRKFDDNKEKT
HCCCCCCCCCCHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHCC
EE
CC
>Mature Secondary Structure
MKEEFELIAKTFQGLEEVLAKELTELGASNIEVGRRMVAFTGDKEMMYRANFCLRTAIRI
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCHHHHHHHHHHHHHHHHH
LKPIKHFEAKNADEVYEAIKAIAWEDFLDKDKSFAVDAVVFSNEFRHSKFVAYKVKDAIV
HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEHEEECCCCCCCCEEEHHHHHHHH
DYFREKTGERPSVRINHPDVALNIHIAENKCTLSLDSSGESLHRRGYRQEAVEAPLNEVL
HHHHHHCCCCCCEEECCCCEEEEEEEECCEEEEEECCCCHHHHHCCCHHHHHHCCHHHHH
AAGMILMTGWKGECDLIDPMCGSGTIPIEAALIARNIAPGVFRKEFAFEKWNDFDQELFD
HHCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHH
RIYNDDSQEREFTHKIFGYDNNPKANEIATHNVKAAGLSKEIILKIQPFQQFEQPKEKSI
HHHCCCCHHHHHHHHHHCCCCCCCCCCHHHCCCHHCCCCCEEEEEECCHHHHCCCCCCEE
IITNPPYGERISTNDLLGLYQMIGERLKHSFTGNDAWVLSYREECFDQIGLKPSIKIPLF
EECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHCCCCCCEEEEEE
NGSLECEFRKYQLFNGKFKEFRSENADQEFKPRREEIRPRRNTEKVEYGERRERRSFDNR
CCCEEEEEEEHHHHCCHHHHHHCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH
REGHGEYKGGERRERRSFDDKREGRGDFKRGEHRNFGDRREGRDNFKSSPRKFDDNKEKT
HCCCCCCCCCCHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHCC
EE
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]