Click here to switch to the map view.

The map label for this gene is ytcB [H]

Identifier: 150003658

GI number: 150003658

Start: 1447938

End: 1448984

Strand: Reverse

Name: ytcB [H]

Synonym: BVU_1089

Alternate gene names: 150003658

Gene position: 1448984-1447938 (Counterclockwise)

Preceding gene: 150003659

Following gene: 150003657

Centisome position: 28.06

GC content: 40.4

Gene sequence:

>1047_bases
ATGAATAACGAAGAATTTGCACAAAAGAACACTTGCTGCTTAAAGAAAGTATTGGTAACCGGAGCAAGCGGATTTATTGG
CAGTTTCCTGGTGGAAGGAGGATTGGAGAGAGAGATGCAGGTATGGGCTGGTGTACGTAAAAGCAGTAGTCGTACCTATT
TGAAAGATCCTCGCATTCAATTTGCCGAATTGGATTTTGCTCATCCCGGAAGATTGACGGAGCAATTGGCTGTTCATAAA
CAATTGCATGGGGGATGGGATTATATCATTCATTGTGCCGGTGTAACTAAATGCCGCCATAAGGACGAATTTGACAAAGG
CAATTATGTCTATACTCGTAATTTTGTAGAAGCTTTGAGAACCTTGGACATGGTTCCCCGGCAATTTGTCTATATCAGTT
CACTTAGTATTTTCGGTCCTATTCATGAAGATAATTATGTACCCATCAGTGAGCGTGATACGGCAATGCCCAATACTGCA
TATGGGGTCAGTAAGCTAAAGTCGGAACATTACCTGCAATCATTGAATGATTTTCCGACAGTGATTTTCCGTCCTACTGG
AGTTTATGGTCCTCGTGAACGCGATTATTTTCTGATGGCGAAGTCTATCAAGCAGCATATAGACTTTGCTCCTGGTTTTA
AAAGACAGGATCTTACTTTTATTTATGTGAGGGATTTGGTACAAGCTGTTTATTTGGCAATAGAACATGGAGTGCGGCAG
CGCGCCTATTTTGTTAGTGACGGAAATGTCTATTCCAGTCGTACTTTTTCTGATTTGATACAAAAAGAACTTGGTAATCC
GTGGGTTATACACATTAAATGCCCATTATTTATTTTAAAAGTTGTATCTTTGCTCGCTGAATTTTCAGCGCGTTGCCTGG
GAAAGGTAAGTACGCTGAATGCTGACAAATATAAAATAATGAAACAACGTAATTGGCAATGCGATATTTCACCCTTGGTG
GAAGAACTGGGATATCGTCCTGAGTACCCTTTAGACAAGGGAGTAAAGGAAATCATTGCATGGTATAAGAAAGAAGGATG
GCTTTAA

Upstream 100 bases:

>100_bases
CACGAGACGGCAACTGGTATTGAACATAGATTGAAAGAAAAGTTTGGAGAGGATACTCATGTGGGTATTCATGTGGAACC
GGTGAAATAACATACGAAGA

Downstream 100 bases:

>100_bases
ATTTATTCAAACGGGTAGACAGTGTGAAAGGATTGTTTGCCGTTGAGAGCATTAGTCTGATATATAATGCCCTCACGACC
ATAATGGTTTTAATATTATT

Product: NAD-dependent epimerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MNNEEFAQKNTCCLKKVLVTGASGFIGSFLVEGGLEREMQVWAGVRKSSSRTYLKDPRIQFAELDFAHPGRLTEQLAVHK
QLHGGWDYIIHCAGVTKCRHKDEFDKGNYVYTRNFVEALRTLDMVPRQFVYISSLSIFGPIHEDNYVPISERDTAMPNTA
YGVSKLKSEHYLQSLNDFPTVIFRPTGVYGPRERDYFLMAKSIKQHIDFAPGFKRQDLTFIYVRDLVQAVYLAIEHGVRQ
RAYFVSDGNVYSSRTFSDLIQKELGNPWVIHIKCPLFILKVVSLLAEFSARCLGKVSTLNADKYKIMKQRNWQCDISPLV
EELGYRPEYPLDKGVKEIIAWYKKEGWL

Sequences:

>Translated_348_residues
MNNEEFAQKNTCCLKKVLVTGASGFIGSFLVEGGLEREMQVWAGVRKSSSRTYLKDPRIQFAELDFAHPGRLTEQLAVHK
QLHGGWDYIIHCAGVTKCRHKDEFDKGNYVYTRNFVEALRTLDMVPRQFVYISSLSIFGPIHEDNYVPISERDTAMPNTA
YGVSKLKSEHYLQSLNDFPTVIFRPTGVYGPRERDYFLMAKSIKQHIDFAPGFKRQDLTFIYVRDLVQAVYLAIEHGVRQ
RAYFVSDGNVYSSRTFSDLIQKELGNPWVIHIKCPLFILKVVSLLAEFSARCLGKVSTLNADKYKIMKQRNWQCDISPLV
EELGYRPEYPLDKGVKEIIAWYKKEGWL
>Mature_348_residues
MNNEEFAQKNTCCLKKVLVTGASGFIGSFLVEGGLEREMQVWAGVRKSSSRTYLKDPRIQFAELDFAHPGRLTEQLAVHK
QLHGGWDYIIHCAGVTKCRHKDEFDKGNYVYTRNFVEALRTLDMVPRQFVYISSLSIFGPIHEDNYVPISERDTAMPNTA
YGVSKLKSEHYLQSLNDFPTVIFRPTGVYGPRERDYFLMAKSIKQHIDFAPGFKRQDLTFIYVRDLVQAVYLAIEHGVRQ
RAYFVSDGNVYSSRTFSDLIQKELGNPWVIHIKCPLFILKVVSLLAEFSARCLGKVSTLNADKYKIMKQRNWQCDISPLV
EELGYRPEYPLDKGVKEIIAWYKKEGWL

Specific function: Unknown

COG id: COG0451

COG function: function code MG; Nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sugar epimerase family [H]

Homologues:

Organism=Escherichia coli, GI87081792, Length=351, Percent_Identity=25.3561253561254, Blast_Score=76, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001509
- InterPro:   IPR016040 [H]

Pfam domain/function: PF01370 Epimerase [H]

EC number: NA

Molecular weight: Translated: 40105; Mature: 40105

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNEEFAQKNTCCLKKVLVTGASGFIGSFLVEGGLEREMQVWAGVRKSSSRTYLKDPRIQ
CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCE
FAELDFAHPGRLTEQLAVHKQLHGGWDYIIHCAGVTKCRHKDEFDKGNYVYTRNFVEALR
EEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCCCCCCCEEEEHHHHHHHH
TLDMVPRQFVYISSLSIFGPIHEDNYVPISERDTAMPNTAYGVSKLKSEHYLQSLNDFPT
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCE
VIFRPTGVYGPRERDYFLMAKSIKQHIDFAPGFKRQDLTFIYVRDLVQAVYLAIEHGVRQ
EEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHH
RAYFVSDGNVYSSRTFSDLIQKELGNPWVIHIKCPLFILKVVSLLAEFSARCLGKVSTLN
CEEEEECCCEECHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCC
ADKYKIMKQRNWQCDISPLVEELGYRPEYPLDKGVKEIIAWYKKEGWL
CHHHHHHHHCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNNEEFAQKNTCCLKKVLVTGASGFIGSFLVEGGLEREMQVWAGVRKSSSRTYLKDPRIQ
CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCE
FAELDFAHPGRLTEQLAVHKQLHGGWDYIIHCAGVTKCRHKDEFDKGNYVYTRNFVEALR
EEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCCCCCCCEEEEHHHHHHHH
TLDMVPRQFVYISSLSIFGPIHEDNYVPISERDTAMPNTAYGVSKLKSEHYLQSLNDFPT
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCE
VIFRPTGVYGPRERDYFLMAKSIKQHIDFAPGFKRQDLTFIYVRDLVQAVYLAIEHGVRQ
EEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHH
RAYFVSDGNVYSSRTFSDLIQKELGNPWVIHIKCPLFILKVVSLLAEFSARCLGKVSTLN
CEEEEECCCEECHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCC
ADKYKIMKQRNWQCDISPLVEELGYRPEYPLDKGVKEIIAWYKKEGWL
CHHHHHHHHCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]