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The map label for this gene is fecI [C]

Identifier: 150003625

GI number: 150003625

Start: 1406597

End: 1407106

Strand: Direct

Name: fecI [C]

Synonym: BVU_1056

Alternate gene names: 150003625

Gene position: 1406597-1407106 (Clockwise)

Preceding gene: 150003624

Following gene: 150003626

Centisome position: 27.24

GC content: 42.55

Gene sequence:

>510_bases
ATGCAATTATCACCCAAGGAATTTGAATACCAATTTCGCTGTCTTTACCGTCCGCTGAATATGTATGCCCTGCGCTATAC
TGAAAATCTGGATGACGCAGAAGACATCGTCCAACAAGCCTTCTCTGATGTATGGGAGAAGCTTGTCGGAGGCACATCTA
TTCAAAACCTGAAAGCTTATATGTACCAAACTGTACGTAACCGCTCACTCACACTGATAACCAACCGACAAACACACTGT
GAAACAACCGAACTGACAGACTTGGAAGATTTAACAGAAGAAGAACGCATCATCCGGTCAGAACGTGACGCGCGTTTATG
GACAGCCATCGACCACCTTCCTACCGAACGGAAAAAGATCTTTCTGCTTTCCAAACGTGACGGCCTTACTTATCAGGAAA
TTGCCACCGAACTGGGTATTTCTATAAAAACTGTCGAACATCAAATCAGTAAGGCACTGAAAACATTACGAGAAACAGCC
ATTAAAATATATACTTTTTTCTTCGGATAA

Upstream 100 bases:

>100_bases
TATCATTACTAAATGAAATTAAAGACTTTTTCATCTCTTGTTGCTTGGCAAATAAAAGAAAAGCCGTAAGTTTGCTTTCC
AAAAAAGAATAAAACACAGG

Downstream 100 bases:

>100_bases
AAAAATCGGCAAGCGAATAGGGGGATTTTGTCTTTTCCCTGTCTTAACAATAAAAAGAAAGAAGATCGCATGGAGAAAGA
AGAGAAAGATATTCGTTTTG

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-70 Factor; Transcriptional Regulator LuxR Family; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase Sigma-H Factor; ECF Subfamily RNA Polymerase Sigma-70 Factor; Sigma-; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF-Type RNA Polymerase; ECF Family RNA Polymerase Sigma-70 Factor; Sigma Factor; ECF Subfamily RNA Polymerase Sigma Factor

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MQLSPKEFEYQFRCLYRPLNMYALRYTENLDDAEDIVQQAFSDVWEKLVGGTSIQNLKAYMYQTVRNRSLTLITNRQTHC
ETTELTDLEDLTEEERIIRSERDARLWTAIDHLPTERKKIFLLSKRDGLTYQEIATELGISIKTVEHQISKALKTLRETA
IKIYTFFFG

Sequences:

>Translated_169_residues
MQLSPKEFEYQFRCLYRPLNMYALRYTENLDDAEDIVQQAFSDVWEKLVGGTSIQNLKAYMYQTVRNRSLTLITNRQTHC
ETTELTDLEDLTEEERIIRSERDARLWTAIDHLPTERKKIFLLSKRDGLTYQEIATELGISIKTVEHQISKALKTLRETA
IKIYTFFFG
>Mature_169_residues
MQLSPKEFEYQFRCLYRPLNMYALRYTENLDDAEDIVQQAFSDVWEKLVGGTSIQNLKAYMYQTVRNRSLTLITNRQTHC
ETTELTDLEDLTEEERIIRSERDARLWTAIDHLPTERKKIFLLSKRDGLTYQEIATELGISIKTVEHQISKALKTLRETA
IKIYTFFFG

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19967; Mature: 19967

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLSPKEFEYQFRCLYRPLNMYALRYTENLDDAEDIVQQAFSDVWEKLVGGTSIQNLKAY
CCCCCHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
MYQTVRNRSLTLITNRQTHCETTELTDLEDLTEEERIIRSERDARLWTAIDHLPTERKKI
HHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEE
FLLSKRDGLTYQEIATELGISIKTVEHQISKALKTLRETAIKIYTFFFG
EEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHEECC
>Mature Secondary Structure
MQLSPKEFEYQFRCLYRPLNMYALRYTENLDDAEDIVQQAFSDVWEKLVGGTSIQNLKAY
CCCCCHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
MYQTVRNRSLTLITNRQTHCETTELTDLEDLTEEERIIRSERDARLWTAIDHLPTERKKI
HHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEE
FLLSKRDGLTYQEIATELGISIKTVEHQISKALKTLRETAIKIYTFFFG
EEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA