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The map label for this gene is 150003354

Identifier: 150003354

GI number: 150003354

Start: 1080751

End: 1081263

Strand: Direct

Name: 150003354

Synonym: BVU_0772

Alternate gene names: NA

Gene position: 1080751-1081263 (Clockwise)

Preceding gene: 150003353

Following gene: 150003355

Centisome position: 20.93

GC content: 53.8

Gene sequence:

>513_bases
ATGGACGCCGCTGAGTTTAAACAACAATTCCTGCCTTACCACCGCAAACTCTACCGGACAGCCTTCCGGCTGACAGAAAA
CCCTCAGGAGGCGGAAGATATGGTGCAGGAGGCGTATCTGAAATTGTGGAACAAGCGCGATGAGCTGGCGGGCGTGCTGA
ACACCGAAGCCTACTGCGTCACCCTTGTCAAGAACCTGTGCTACGACGCCCTCCGCAGGAGCCGGCCCGATGAAGACGGA
CATGCACCCGAAGAGCTGAACCTCCCTACGGACACCAACATAGCGCGGGAAGTGGAACAACGGGATGAGGTGAACCAGGT
ACGCCGGCTCATCGGCAGACTGCCAGAGCAACAAAAGCGGGTGATTCTGCTCCGTGATGTCAATGACTGCTCCTTTGAGG
AGATAGAGCAAGCCACAGGACTGAATGCCATCAACATACGTGTGTTGCTGAGCCGCGCCCGCAAAAAGATACGTGAACAA
TATAATGCAATAATGAACTATGAAAGTAAATGA

Upstream 100 bases:

>100_bases
ATAGAGGATGATGAATGCTCACTGATACAAGTAAACGGAAAAATACGCAAACAAGATATTGCCCAACTTATAAACGATCA
GACAACAAATAAGAAGAAGC

Downstream 100 bases:

>100_bases
AATAGAAAGACTATTGGCCCGGTATTACGATGGAGAAACCAGCGAAACCGAAGAAAAGGAACTGAAACGCTTTTTTACCG
AAGAGGACATTCCGGCTCAT

Product: putative RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; Sigma-70 Region 4 Family; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; Extracytoplasmic Function AlteRNAtive Sigma Factor; RNA Polymerase Sigma Factor; ECF Family RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Factor RpoE; RNA Polymerase Sigma Factor SigW; RNA Polymerase Sigma-70 Factor; Sigma Factor; ECF Family RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Factor Sigma-54 SigL

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MDAAEFKQQFLPYHRKLYRTAFRLTENPQEAEDMVQEAYLKLWNKRDELAGVLNTEAYCVTLVKNLCYDALRRSRPDEDG
HAPEELNLPTDTNIAREVEQRDEVNQVRRLIGRLPEQQKRVILLRDVNDCSFEEIEQATGLNAINIRVLLSRARKKIREQ
YNAIMNYESK

Sequences:

>Translated_170_residues
MDAAEFKQQFLPYHRKLYRTAFRLTENPQEAEDMVQEAYLKLWNKRDELAGVLNTEAYCVTLVKNLCYDALRRSRPDEDG
HAPEELNLPTDTNIAREVEQRDEVNQVRRLIGRLPEQQKRVILLRDVNDCSFEEIEQATGLNAINIRVLLSRARKKIREQ
YNAIMNYESK
>Mature_170_residues
MDAAEFKQQFLPYHRKLYRTAFRLTENPQEAEDMVQEAYLKLWNKRDELAGVLNTEAYCVTLVKNLCYDALRRSRPDEDG
HAPEELNLPTDTNIAREVEQRDEVNQVRRLIGRLPEQQKRVILLRDVNDCSFEEIEQATGLNAINIRVLLSRARKKIREQ
YNAIMNYESK

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20041; Mature: 20041

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAAEFKQQFLPYHRKLYRTAFRLTENPQEAEDMVQEAYLKLWNKRDELAGVLNTEAYCV
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHH
TLVKNLCYDALRRSRPDEDGHAPEELNLPTDTNIAREVEQRDEVNQVRRLIGRLPEQQKR
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHCC
VILLRDVNDCSFEEIEQATGLNAINIRVLLSRARKKIREQYNAIMNYESK
EEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDAAEFKQQFLPYHRKLYRTAFRLTENPQEAEDMVQEAYLKLWNKRDELAGVLNTEAYCV
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHH
TLVKNLCYDALRRSRPDEDGHAPEELNLPTDTNIAREVEQRDEVNQVRRLIGRLPEQQKR
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHCC
VILLRDVNDCSFEEIEQATGLNAINIRVLLSRARKKIREQYNAIMNYESK
EEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA