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The map label for this gene is ycjD [C]

Identifier: 148828318

GI number: 148828318

Start: 1759729

End: 1760109

Strand: Reverse

Name: ycjD [C]

Synonym: CGSHiGG_09500

Alternate gene names: 148828318

Gene position: 1760109-1759729 (Counterclockwise)

Preceding gene: 148828319

Following gene: 148828317

Centisome position: 93.27

GC content: 32.55

Gene sequence:

>381_bases
ATGCGAAATAAAAATAAACGATTAGCCCAATATGCTACAGAATTAAGACATAATATGACAGATGCAGAGTATGCACTATG
GTACCATTTGAGAAATAAACTCTTTTGTGGTATCCGTTTTAATAGACAGGTTATTATTGGTCATTACATTGTGGATTTTT
GCAGTAGAAAATTAAAACTTGTTATTGAATTAGATGGTATTCAACACGTAGAACAAGAACAATATGATTTAGAAAGAACA
AAATTCTTAACAGCACAAGGCTATAAAATTATTCGGTTTTGGAATGATGAAGTACTAAAAAACATAGATAATGTACTTGA
GGCAATTTATGTTGAAATTGAGCATTTATCCCCCCTCAGCCTTCGGCAGCTCCCCCCATAA

Upstream 100 bases:

>100_bases
CCTTACTTGAGATATTTAAATAAAGAATGATAACTTGCCTTCCCCTGCTTGCGGGGGAAGGTGCCCGAAGGGCGGAAGGG
GGATATAGGGATATAAGGAT

Downstream 100 bases:

>100_bases
ATGGGTGGAGCCAAGATAATTGATAATATGGAATAGATCAAATGCTCTGGAAAAAAACTTTTACGCTCGAAAACTTAAAT
CAACTTTGCTCCAACAGTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MRNKNKRLAQYATELRHNMTDAEYALWYHLRNKLFCGIRFNRQVIIGHYIVDFCSRKLKLVIELDGIQHVEQEQYDLERT
KFLTAQGYKIIRFWNDEVLKNIDNVLEAIYVEIEHLSPLSLRQLPP

Sequences:

>Translated_126_residues
MRNKNKRLAQYATELRHNMTDAEYALWYHLRNKLFCGIRFNRQVIIGHYIVDFCSRKLKLVIELDGIQHVEQEQYDLERT
KFLTAQGYKIIRFWNDEVLKNIDNVLEAIYVEIEHLSPLSLRQLPP
>Mature_126_residues
MRNKNKRLAQYATELRHNMTDAEYALWYHLRNKLFCGIRFNRQVIIGHYIVDFCSRKLKLVIELDGIQHVEQEQYDLERT
KFLTAQGYKIIRFWNDEVLKNIDNVLEAIYVEIEHLSPLSLRQLPP

Specific function: Unknown

COG id: COG2852

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ycjD and H.influenzae HI_0925 [H]

Homologues:

Organism=Escherichia coli, GI1787546, Length=112, Percent_Identity=41.0714285714286, Blast_Score=94, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007569
- InterPro:   IPR011335 [H]

Pfam domain/function: PF04480 DUF559 [H]

EC number: NA

Molecular weight: Translated: 15163; Mature: 15163

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNKNKRLAQYATELRHNMTDAEYALWYHLRNKLFCGIRFNRQVIIGHYIVDFCSRKLKL
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEEEEEEECCEEEHHHHHHHHHCCCEEE
VIELDGIQHVEQEQYDLERTKFLTAQGYKIIRFWNDEVLKNIDNVLEAIYVEIEHLSPLS
EEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCC
LRQLPP
CCCCCC
>Mature Secondary Structure
MRNKNKRLAQYATELRHNMTDAEYALWYHLRNKLFCGIRFNRQVIIGHYIVDFCSRKLKL
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEEEEEEECCEEEHHHHHHHHHCCCEEE
VIELDGIQHVEQEQYDLERTKFLTAQGYKIIRFWNDEVLKNIDNVLEAIYVEIEHLSPLS
EEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCC
LRQLPP
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]