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The map label for this gene is lptC [H]

Identifier: 148828309

GI number: 148828309

Start: 1746935

End: 1747549

Strand: Reverse

Name: lptC [H]

Synonym: CGSHiGG_09415

Alternate gene names: 148828309

Gene position: 1747549-1746935 (Counterclockwise)

Preceding gene: 148828310

Following gene: 148828308

Centisome position: 92.6

GC content: 34.15

Gene sequence:

>615_bases
ATGAATATTCGTTGGAATGTAATTTTGGGCGTTATCGCACTTTGTGCTTTGGCGTGGTTTTATTCCTTAAATCAGGAAAC
CGCAGATTTATCTGAACTGGTGAAAAAGCCAGATAGTCCTGATTATGTGGGTTATAAAATGGAAACTACGGTTTTTTTCC
CTGATGGTAAAAAACAATATTTGGCTTTATCCGATAAAATTGAGCATTATACAGTCAATGAACAAACCCTTTTTACCGCG
CCTTTAGTTTATTTATATCCCACAACATCAAATGAAAAGGAAGAGGAAAAAAATGCCAATCAAAATGTAGATTTTTTTAG
CACACAAAGCTGGAAATTAAGTGCAAATCAAGCAAGATTGACAAAAGATCAAATATTGTATTTAGAGGGTAATGTCGTCG
CGCAAAATTTAACATCAGATTCACGTTTGCAACGCATTGAAACAGAATCAGCGGTCGTCAATTTGAAAACACAGGATATG
ACTTCCGAAACACAGGTTAAAATTAAGGGTAAAAATTTTAGTTCTACAGGATTAAAATTAGTCGGAAATTTACGCCAACA
AGTGGCGACATTAAAGGAACAGGTAAAAACATATTATGAAGTTAGTAAGCAATAA

Upstream 100 bases:

>100_bases
CCTATCGAGAAATTTATCAAATGCTCAAGGTATTAATGTTGGAAGATTAAAAATATTGAAATTTTCATCCGCACTTTGTG
GATAAGTGATTGAAATAAAA

Downstream 100 bases:

>100_bases
AATTCTTTTTCTTGCAACGATGGTATTAGCATCAAGTTCAGCTTTTGCATTGAAAGGTGATGTTAATCAGCCGATAAATA
TTGTTTCGGATAATCAATCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MNIRWNVILGVIALCALAWFYSLNQETADLSELVKKPDSPDYVGYKMETTVFFPDGKKQYLALSDKIEHYTVNEQTLFTA
PLVYLYPTTSNEKEEEKNANQNVDFFSTQSWKLSANQARLTKDQILYLEGNVVAQNLTSDSRLQRIETESAVVNLKTQDM
TSETQVKIKGKNFSSTGLKLVGNLRQQVATLKEQVKTYYEVSKQ

Sequences:

>Translated_204_residues
MNIRWNVILGVIALCALAWFYSLNQETADLSELVKKPDSPDYVGYKMETTVFFPDGKKQYLALSDKIEHYTVNEQTLFTA
PLVYLYPTTSNEKEEEKNANQNVDFFSTQSWKLSANQARLTKDQILYLEGNVVAQNLTSDSRLQRIETESAVVNLKTQDM
TSETQVKIKGKNFSSTGLKLVGNLRQQVATLKEQVKTYYEVSKQ
>Mature_204_residues
MNIRWNVILGVIALCALAWFYSLNQETADLSELVKKPDSPDYVGYKMETTVFFPDGKKQYLALSDKIEHYTVNEQTLFTA
PLVYLYPTTSNEKEEEKNANQNVDFFSTQSWKLSANQARLTKDQILYLEGNVVAQNLTSDSRLQRIETESAVVNLKTQDM
TSETQVKIKGKNFSSTGLKLVGNLRQQVATLKEQVKTYYEVSKQ

Specific function: Required for the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG3117

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptC family [H]

Homologues:

Organism=Escherichia coli, GI1789591, Length=198, Percent_Identity=34.3434343434343, Blast_Score=111, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010664 [H]

Pfam domain/function: PF06835 DUF1239 [H]

EC number: NA

Molecular weight: Translated: 23284; Mature: 23284

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIRWNVILGVIALCALAWFYSLNQETADLSELVKKPDSPDYVGYKMETTVFFPDGKKQY
CCEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCEE
LALSDKIEHYTVNEQTLFTAPLVYLYPTTSNEKEEEKNANQNVDFFSTQSWKLSANQARL
EEECCCCEEEECCCCEEEECCEEEEEECCCCCCHHHHCCCCCCCEEECCCEEEECCCHHC
TKDQILYLEGNVVAQNLTSDSRLQRIETESAVVNLKTQDMTSETQVKIKGKNFSSTGLKL
CCCEEEEEECCEEEECCCCHHHHHHHCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHH
VGNLRQQVATLKEQVKTYYEVSKQ
HHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNIRWNVILGVIALCALAWFYSLNQETADLSELVKKPDSPDYVGYKMETTVFFPDGKKQY
CCEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCEE
LALSDKIEHYTVNEQTLFTAPLVYLYPTTSNEKEEEKNANQNVDFFSTQSWKLSANQARL
EEECCCCEEEECCCCEEEECCEEEEEECCCCCCHHHHCCCCCCCEEECCCEEEECCCHHC
TKDQILYLEGNVVAQNLTSDSRLQRIETESAVVNLKTQDMTSETQVKIKGKNFSSTGLKL
CCCEEEEEECCEEEECCCCHHHHHHHCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHH
VGNLRQQVATLKEQVKTYYEVSKQ
HHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]