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The map label for this gene is xylH [H]

Identifier: 148828270

GI number: 148828270

Start: 1702746

End: 1703873

Strand: Reverse

Name: xylH [H]

Synonym: CGSHiGG_09200

Alternate gene names: 148828270

Gene position: 1703873-1702746 (Counterclockwise)

Preceding gene: 148828271

Following gene: 148828269

Centisome position: 90.29

GC content: 38.56

Gene sequence:

>1128_bases
ATGTTTAAGTTAAAATCCGTAAATTTACAAGTTTACATTATGTTAATAGCTATTGCAGTCATTATGGCATTCTTTAGTGT
TGCCACTGATGGCGCTTATTTAAGTGCAAGAAATATTTCTAACTTGTTACGCCAAACTTCAATTACTGGCATTCTTGCAA
TTGGAATGGTTTTTGTCATTATTTCTGCTGAAATTGACTTATCTGTTGGTTCACTTATGGGCCTACTGGGCGGATTTGCA
GCTATTGCCGATGTTTGGTGGGGCTTCCCATTACCTGTAACTATTATTGCAACAATTGCTCTTGGTTTAATTTTTGGTAT
TTGGAATGGTTGGTGGGTGGCTTATCGCAAAGTGCCATCCTTCATTGTTACACTTGCAGGTTATCTCGCATTTCGTGGAA
TTTTGATTGGTTTGACTAATGGTACAACTGTATCTCCTATTAGTGGAACTATGACAGTTATTGGGCAAGGTTATTTATCA
GATATTGCAGGGGTTATCTTAGGTGGTATTGCAGTTATTGGATTTGTTCTTTGGGGAAATTATCAACGTAGAAGTCGCCA
GCAGCTTCAGCTGGAAGTATCTGCATTATCAAAAGATTTTACGAAATATGCTTTGTTTGCAGTAATTGTATTAGGAGCAA
TTTATTTACTTAATGATTATCGTGGCATTCCGTTTCCTGTTTTAGTACTGGCAGTTCTTGCAATCTTAGGGTTATTCCTC
TCTCGTAAAACTTCATTCGGCCGCCACGTTTATGCGATTGGTGGCAATATTGATGCGGCAAAATTATCTGGTATCAATGT
AGAGAAAACAAAGCTGATTATCTTTGCAATGAATGGTGTGTTAGTTGCAATAGCAGGGTTGATTTTAAGTGCTCGTTTAG
GTGCAGGCTCACCATCTGCTGGGCAAAATGCAGAACTAGATGCGATTGCAGCTTGTGTCATTGGAGGGGCAAGCTTAGCT
GGTGGTGTAGGAAGTGTGTTTGGGGTCGTTATTGGTGCACTTATCATCGCATCGCTTGATAATGGTATGAGTATGCTTGA
TGTGCCAACTTTTTGGCAATATATTGTCAAAGGTGGCATTTTGTTACTTGCTGTATGGATAGATATTAGTAATAAGAAAA
AGATGTAA

Upstream 100 bases:

>100_bases
TAGAGTTCTTGTTATGCACCAAGGTAAACTTAAAGCTAGTCTTATCAATACTGCTCTTACTCAAGAACAAGTTATGGAAA
CAGCACTTAAGGAGTAATCT

Downstream 100 bases:

>100_bases
TTATTAATTTTAAACCGTCATTTATAAAATGGCGGTTTTTTAATTTTATAGAAATGGTTACCTAACATACTGCTTTCTAG
ATGATGAAATTTTTCGTATT

Product: D-xylose ABC transporter permease protein

Products: ADP; phosphate; xylose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MFKLKSVNLQVYIMLIAIAVIMAFFSVATDGAYLSARNISNLLRQTSITGILAIGMVFVIISAEIDLSVGSLMGLLGGFA
AIADVWWGFPLPVTIIATIALGLIFGIWNGWWVAYRKVPSFIVTLAGYLAFRGILIGLTNGTTVSPISGTMTVIGQGYLS
DIAGVILGGIAVIGFVLWGNYQRRSRQQLQLEVSALSKDFTKYALFAVIVLGAIYLLNDYRGIPFPVLVLAVLAILGLFL
SRKTSFGRHVYAIGGNIDAAKLSGINVEKTKLIIFAMNGVLVAIAGLILSARLGAGSPSAGQNAELDAIAACVIGGASLA
GGVGSVFGVVIGALIIASLDNGMSMLDVPTFWQYIVKGGILLLAVWIDISNKKKM

Sequences:

>Translated_375_residues
MFKLKSVNLQVYIMLIAIAVIMAFFSVATDGAYLSARNISNLLRQTSITGILAIGMVFVIISAEIDLSVGSLMGLLGGFA
AIADVWWGFPLPVTIIATIALGLIFGIWNGWWVAYRKVPSFIVTLAGYLAFRGILIGLTNGTTVSPISGTMTVIGQGYLS
DIAGVILGGIAVIGFVLWGNYQRRSRQQLQLEVSALSKDFTKYALFAVIVLGAIYLLNDYRGIPFPVLVLAVLAILGLFL
SRKTSFGRHVYAIGGNIDAAKLSGINVEKTKLIIFAMNGVLVAIAGLILSARLGAGSPSAGQNAELDAIAACVIGGASLA
GGVGSVFGVVIGALIIASLDNGMSMLDVPTFWQYIVKGGILLLAVWIDISNKKKM
>Mature_375_residues
MFKLKSVNLQVYIMLIAIAVIMAFFSVATDGAYLSARNISNLLRQTSITGILAIGMVFVIISAEIDLSVGSLMGLLGGFA
AIADVWWGFPLPVTIIATIALGLIFGIWNGWWVAYRKVPSFIVTLAGYLAFRGILIGLTNGTTVSPISGTMTVIGQGYLS
DIAGVILGGIAVIGFVLWGNYQRRSRQQLQLEVSALSKDFTKYALFAVIVLGAIYLLNDYRGIPFPVLVLAVLAILGLFL
SRKTSFGRHVYAIGGNIDAAKLSGINVEKTKLIIFAMNGVLVAIAGLILSARLGAGSPSAGQNAELDAIAACVIGGASLA
GGVGSVFGVVIGALIIASLDNGMSMLDVPTFWQYIVKGGILLLAVWIDISNKKKM

Specific function: Part of the binding-protein-dependent transport system for D-xylose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4214

COG function: function code G; ABC-type xylose transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789992, Length=371, Percent_Identity=70.0808625336927, Blast_Score=480, Evalue=1e-137,
Organism=Escherichia coli, GI1788896, Length=386, Percent_Identity=32.3834196891192, Blast_Score=151, Evalue=7e-38,
Organism=Escherichia coli, GI1790524, Length=351, Percent_Identity=31.6239316239316, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI1790191, Length=153, Percent_Identity=47.0588235294118, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI145693152, Length=156, Percent_Identity=46.7948717948718, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI87082395, Length=305, Percent_Identity=33.1147540983607, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1788471, Length=369, Percent_Identity=32.2493224932249, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI145693214, Length=310, Percent_Identity=30, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI1787793, Length=120, Percent_Identity=37.5, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787794, Length=147, Percent_Identity=31.2925170068027, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 39525; Mature: 39525

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKLKSVNLQVYIMLIAIAVIMAFFSVATDGAYLSARNISNLLRQTSITGILAIGMVFVI
CCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHH
ISAEIDLSVGSLMGLLGGFAAIADVWWGFPLPVTIIATIALGLIFGIWNGWWVAYRKVPS
HHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FIVTLAGYLAFRGILIGLTNGTTVSPISGTMTVIGQGYLSDIAGVILGGIAVIGFVLWGN
HHHHHHHHHHHHHHEEEECCCCEECCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
YQRRSRQQLQLEVSALSKDFTKYALFAVIVLGAIYLLNDYRGIPFPVLVLAVLAILGLFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
SRKTSFGRHVYAIGGNIDAAKLSGINVEKTKLIIFAMNGVLVAIAGLILSARLGAGSPSA
HCCCCCCCEEEEECCCCCHHHCCCCCEEHHEEEEEECCHHHHHHHHHHHHHHCCCCCCCC
GQNAELDAIAACVIGGASLAGGVGSVFGVVIGALIIASLDNGMSMLDVPTFWQYIVKGGI
CCCCCHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
LLLAVWIDISNKKKM
EEEEEEEECCCCCCC
>Mature Secondary Structure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EEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; xylose [Periplasm]; H2O [C]

Specific reaction: ATP + xylose [Periplasm] + H2O = ADP + phosphate + xylose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]