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The map label for this gene is ccmH [H]

Identifier: 148828257

GI number: 148828257

Start: 1688475

End: 1688936

Strand: Direct

Name: ccmH [H]

Synonym: CGSHiGG_09125

Alternate gene names: 148828257

Gene position: 1688475-1688936 (Clockwise)

Preceding gene: 148828256

Following gene: 148828258

Centisome position: 89.47

GC content: 38.53

Gene sequence:

>462_bases
ATGAAAAAAACATGGCTATTTTTGACCGCACTTTTGTTTAGCTCAGCGGCATTTTCAGCTATTGACGCATTAAATTTTAG
TTCTCCACAGCAAGAGAGTGATTACCATCAATTAACACAATCTTTGCGTTGTCCTCAATGTCAAAATAACAATATTGCGG
ATTCCAATGCGACTATCGCAGTGGATATGCGTGGCAAAGTATTTGAGCTTTTACAAGAAGGCAAATCAAAAAATGACGTA
GTGGATTATATGGTGGCGCGCTATGGCAATTTTGTAACTTACGATCCACCTATGACAGCGAGTACATTAGTGCTATGGAT
TGCGCCATTATTGCTTGTGTTGTTAGGCGTGGTGTTTTTATTAAGACGCAAACCTAAAACCCAAAGTGCGGTGAAATCCC
AAGAGATTTTAACGGATGAAGATAATGCACGTTTGGCAGAATTATTAAACAAGGATAAATAG

Upstream 100 bases:

>100_bases
GAAAAGGAGTGATTCATTATCGTTATGCTGGAGATGTAAACGAAAAAGTTTGGACTCAGACTTTAAAACCAATTTATGAC
AAACTTTCGGAGCAACAATA

Downstream 100 bases:

>100_bases
ATGAATTTTACATTAATTTTTATCTTAACCACTTTAATTGTGGCGTTAATTTGTTTTTATCCTTTATTGTGTCAATTCAA
AGCGAAACATGGGCAAAAAC

Product: cytochrome C-type biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MKKTWLFLTALLFSSAAFSAIDALNFSSPQQESDYHQLTQSLRCPQCQNNNIADSNATIAVDMRGKVFELLQEGKSKNDV
VDYMVARYGNFVTYDPPMTASTLVLWIAPLLLVLLGVVFLLRRKPKTQSAVKSQEILTDEDNARLAELLNKDK

Sequences:

>Translated_153_residues
MKKTWLFLTALLFSSAAFSAIDALNFSSPQQESDYHQLTQSLRCPQCQNNNIADSNATIAVDMRGKVFELLQEGKSKNDV
VDYMVARYGNFVTYDPPMTASTLVLWIAPLLLVLLGVVFLLRRKPKTQSAVKSQEILTDEDNARLAELLNKDK
>Mature_153_residues
MKKTWLFLTALLFSSAAFSAIDALNFSSPQQESDYHQLTQSLRCPQCQNNNIADSNATIAVDMRGKVFELLQEGKSKNDV
VDYMVARYGNFVTYDPPMTASTLVLWIAPLLLVLLGVVFLLRRKPKTQSAVKSQEILTDEDNARLAELLNKDK

Specific function: May be required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=106, Percent_Identity=58.4905660377358, Blast_Score=147, Evalue=4e-37,
Organism=Escherichia coli, GI1790512, Length=82, Percent_Identity=43.9024390243902, Blast_Score=87, Evalue=6e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616
- InterPro:   IPR017560
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 17173; Mature: 17173

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTWLFLTALLFSSAAFSAIDALNFSSPQQESDYHQLTQSLRCPQCQNNNIADSNATIA
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEE
VDMRGKVFELLQEGKSKNDVVDYMVARYGNFVTYDPPMTASTLVLWIAPLLLVLLGVVFL
EECCHHHHHHHHCCCCCHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
LRRKPKTQSAVKSQEILTDEDNARLAELLNKDK
HHCCCCHHHHHHHHHHHCCCCCHHHHHHHCCCC
>Mature Secondary Structure
MKKTWLFLTALLFSSAAFSAIDALNFSSPQQESDYHQLTQSLRCPQCQNNNIADSNATIA
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEE
VDMRGKVFELLQEGKSKNDVVDYMVARYGNFVTYDPPMTASTLVLWIAPLLLVLLGVVFL
EECCHHHHHHHHCCCCCHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
LRRKPKTQSAVKSQEILTDEDNARLAELLNKDK
HHCCCCHHHHHHHHHHHCCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]