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The map label for this gene is sodA [H]

Identifier: 148828250

GI number: 148828250

Start: 1682117

End: 1682752

Strand: Reverse

Name: sodA [H]

Synonym: CGSHiGG_09080

Alternate gene names: 148828250

Gene position: 1682752-1682117 (Counterclockwise)

Preceding gene: 148828262

Following gene: 148828249

Centisome position: 89.17

GC content: 39.62

Gene sequence:

>636_bases
ATGTCTTACACTCTCCCTGAATTAGGCTATGCCTACAATGCGTTAGAACCACATTTTGATGCACAAACAATGGAAATCCA
TCATAGTAAACACCACCAAGCTTACGTAAACAATGCAAATGCGGCATTAGAAGGTTTACCTGCTGAATTAGTAGAAATGT
ATCCGGGTCATTTAATTTCTAACCTTGATAAAATTCCTGCAGAAAAACGTGGAGCATTACGTAATAATGCTGGAGGCCAC
ACAAACCACAGTTTATTTTGGAAAAGCTTGAAAAAAGGCACTACTTTACAAGGCGCATTAAAAGATGCGATTGAACGCGA
TTTCGGTTCTGTAGATGCATTTAAAGCAGAGTTTGAAAAAGCAGCAGCAATTCGTTTCGGTTCAGGTTGGGCATGGTTAG
TATTAACCGCTGAAGGTAAATTAGCCGTTGTATCAACAGCAAACCAAGATAACCCATTAATGGGTAAAGAAGTGGCAGGT
TGTGAGGGTTTCCCACTTTTAGGTTTAGACGTTTGGGAACACGCTTACTACTTAAAATTCCAAAACCGCCGTCCAGACTA
CATTAAAGAATTCTGGAATGTGGTAAACTGGGATTTCGTTGCAGAACGTTTTGAACAAAAAAACAGCACACTGTAA

Upstream 100 bases:

>100_bases
TTTAATGATCTAAATCAATTTTTTTGCTATTATTTGCTCAATTTTGGTTATAGACCAAAACCTCAACGAAATCTGTTTTT
AACAATAGAAGGAATACATT

Downstream 100 bases:

>100_bases
CTGTGCAAAATAATAAACATAGGAAAACCTAGCAAAAGTTAGGTTTTTCTGCTTTCCTCTCTATAACTTTTCTTTTGCAA
TCTTTTTTATCAAATCTGTA

Product: superoxide dismutase (Mn)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MSYTLPELGYAYNALEPHFDAQTMEIHHSKHHQAYVNNANAALEGLPAELVEMYPGHLISNLDKIPAEKRGALRNNAGGH
TNHSLFWKSLKKGTTLQGALKDAIERDFGSVDAFKAEFEKAAAIRFGSGWAWLVLTAEGKLAVVSTANQDNPLMGKEVAG
CEGFPLLGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDFVAERFEQKNSTL

Sequences:

>Translated_211_residues
MSYTLPELGYAYNALEPHFDAQTMEIHHSKHHQAYVNNANAALEGLPAELVEMYPGHLISNLDKIPAEKRGALRNNAGGH
TNHSLFWKSLKKGTTLQGALKDAIERDFGSVDAFKAEFEKAAAIRFGSGWAWLVLTAEGKLAVVSTANQDNPLMGKEVAG
CEGFPLLGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDFVAERFEQKNSTL
>Mature_210_residues
SYTLPELGYAYNALEPHFDAQTMEIHHSKHHQAYVNNANAALEGLPAELVEMYPGHLISNLDKIPAEKRGALRNNAGGHT
NHSLFWKSLKKGTTLQGALKDAIERDFGSVDAFKAEFEKAAAIRFGSGWAWLVLTAEGKLAVVSTANQDNPLMGKEVAGC
EGFPLLGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDFVAERFEQKNSTL

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=205, Percent_Identity=47.3170731707317, Blast_Score=179, Evalue=1e-45,
Organism=Homo sapiens, GI67782305, Length=205, Percent_Identity=47.3170731707317, Blast_Score=179, Evalue=1e-45,
Organism=Homo sapiens, GI67782309, Length=203, Percent_Identity=40.8866995073892, Blast_Score=144, Evalue=6e-35,
Organism=Escherichia coli, GI1790342, Length=207, Percent_Identity=76.8115942028985, Blast_Score=328, Evalue=1e-91,
Organism=Escherichia coli, GI1787946, Length=206, Percent_Identity=43.2038834951456, Blast_Score=168, Evalue=2e-43,
Organism=Caenorhabditis elegans, GI17569479, Length=203, Percent_Identity=39.9014778325123, Blast_Score=152, Evalue=9e-38,
Organism=Caenorhabditis elegans, GI17506561, Length=203, Percent_Identity=40.3940886699507, Blast_Score=152, Evalue=1e-37,
Organism=Saccharomyces cerevisiae, GI6321796, Length=215, Percent_Identity=40.9302325581395, Blast_Score=142, Evalue=3e-35,
Organism=Drosophila melanogaster, GI17136812, Length=206, Percent_Identity=42.7184466019417, Blast_Score=156, Evalue=1e-38,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 23725; Mature: 23594

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYTLPELGYAYNALEPHFDAQTMEIHHSKHHQAYVNNANAALEGLPAELVEMYPGHLIS
CCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHCCCHHHH
NLDKIPAEKRGALRNNAGGHTNHSLFWKSLKKGTTLQGALKDAIERDFGSVDAFKAEFEK
HHHHCCCHHHCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
AAAIRFGSGWAWLVLTAEGKLAVVSTANQDNPLMGKEVAGCEGFPLLGLDVWEHAYYLKF
HHHEEECCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHEEEEEE
QNRRPDYIKEFWNVVNWDFVAERFEQKNSTL
CCCCCHHHHHHHHHHCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SYTLPELGYAYNALEPHFDAQTMEIHHSKHHQAYVNNANAALEGLPAELVEMYPGHLIS
CCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHCCCHHHH
NLDKIPAEKRGALRNNAGGHTNHSLFWKSLKKGTTLQGALKDAIERDFGSVDAFKAEFEK
HHHHCCCHHHCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
AAAIRFGSGWAWLVLTAEGKLAVVSTANQDNPLMGKEVAGCEGFPLLGLDVWEHAYYLKF
HHHEEECCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHEEEEEE
QNRRPDYIKEFWNVVNWDFVAERFEQKNSTL
CCCCCHHHHHHHHHHCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934846; 7542800; 10675023 [H]