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The map label for this gene is yrbD [C]

Identifier: 148828247

GI number: 148828247

Start: 1679612

End: 1680112

Strand: Reverse

Name: yrbD [C]

Synonym: CGSHiGG_09065

Alternate gene names: 148828247

Gene position: 1680112-1679612 (Counterclockwise)

Preceding gene: 148828248

Following gene: 148828246

Centisome position: 89.03

GC content: 34.33

Gene sequence:

>501_bases
ATGAGACAAACAATTAAATATGAATTTTGGGTCGGGTTATTTTTATTACTTGGTATTGGTGCCTTAGTTTTTTTAGGTTT
ACGCGTAGCTAATGTACAAGGTTTTGCTGAGACGAAATCTTATACCGTGACGGCAATTTTTAATAATATTGGCGGACTTA
AAGTGCGCGCACCACTAAAAATTGGAGGCGTAGTAATTGGGCGTGTGAGTGCTATTACGCTTGATGAAAAAAGCTATTTA
CCAAAAGTAAGTATTGCGATTAATCAAGAATATAATGAAATCCCAGAAAACAGTTCTTTATCAATTAAAACATCAGGTTT
ATTAGGTGAGCAATATATTGCCTTGACAATAGGTTTTGATGATGGAGATACAGCAATGCTTAAAAATGGTAGCCAAATTC
AAGACACTACATCAGCTATAGTATTGGAAGATTTAATTGGGCAATTCTTATACGGAAGTAAAAAATCAGACGGCAATGAA
AAATCAGAATCCGCAGAATAA

Upstream 100 bases:

>100_bases
CCAAGCTACAACACGAACAGTTGTGCACGCTTCACTTGTTGTTCTAGGCTTAGATTTTATTTTGACTGCTATTATGTTTG
GTGCAAGTTAAGGATTTTTT

Downstream 100 bases:

>100_bases
TAGGTTAAATTTTATAAATTAGGAGATTGATAATGAACCTTACTCAACTAAAAAAATGGTTTACTATTTTAACTTTCGTA
TTAACCGCACTTTTGGTTAC

Product: ABC transporter periplasmic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MRQTIKYEFWVGLFLLLGIGALVFLGLRVANVQGFAETKSYTVTAIFNNIGGLKVRAPLKIGGVVIGRVSAITLDEKSYL
PKVSIAINQEYNEIPENSSLSIKTSGLLGEQYIALTIGFDDGDTAMLKNGSQIQDTTSAIVLEDLIGQFLYGSKKSDGNE
KSESAE

Sequences:

>Translated_166_residues
MRQTIKYEFWVGLFLLLGIGALVFLGLRVANVQGFAETKSYTVTAIFNNIGGLKVRAPLKIGGVVIGRVSAITLDEKSYL
PKVSIAINQEYNEIPENSSLSIKTSGLLGEQYIALTIGFDDGDTAMLKNGSQIQDTTSAIVLEDLIGQFLYGSKKSDGNE
KSESAE
>Mature_166_residues
MRQTIKYEFWVGLFLLLGIGALVFLGLRVANVQGFAETKSYTVTAIFNNIGGLKVRAPLKIGGVVIGRVSAITLDEKSYL
PKVSIAINQEYNEIPENSSLSIKTSGLLGEQYIALTIGFDDGDTAMLKNGSQIQDTTSAIVLEDLIGQFLYGSKKSDGNE
KSESAE

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG1463

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, periplasmic component

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaD family [H]

Homologues:

Organism=Escherichia coli, GI1789584, Length=165, Percent_Identity=58.1818181818182, Blast_Score=189, Evalue=8e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003399 [H]

Pfam domain/function: PF02470 MCE [H]

EC number: NA

Molecular weight: Translated: 17928; Mature: 17928

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQTIKYEFWVGLFLLLGIGALVFLGLRVANVQGFAETKSYTVTAIFNNIGGLKVRAPLK
CCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCEEEECCEE
IGGVVIGRVSAITLDEKSYLPKVSIAINQEYNEIPENSSLSIKTSGLLGEQYIALTIGFD
ECCEEEEEEEEEEECCCCCCCEEEEEECCCHHHCCCCCCEEEEECCCCCCEEEEEEEEEC
DGDTAMLKNGSQIQDTTSAIVLEDLIGQFLYGSKKSDGNEKSESAE
CCCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRQTIKYEFWVGLFLLLGIGALVFLGLRVANVQGFAETKSYTVTAIFNNIGGLKVRAPLK
CCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCEEEECCEE
IGGVVIGRVSAITLDEKSYLPKVSIAINQEYNEIPENSSLSIKTSGLLGEQYIALTIGFD
ECCEEEEEEEEEEECCCCCCCEEEEEECCCHHHCCCCCCEEEEECCCCCCEEEEEEEEEC
DGDTAMLKNGSQIQDTTSAIVLEDLIGQFLYGSKKSDGNEKSESAE
CCCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]