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The map label for this gene is rnpA

Identifier: 148828169

GI number: 148828169

Start: 1592682

End: 1593041

Strand: Direct

Name: rnpA

Synonym: CGSHiGG_08595

Alternate gene names: 148828169

Gene position: 1592682-1593041 (Clockwise)

Preceding gene: 148828168

Following gene: 148828170

Centisome position: 84.39

GC content: 37.22

Gene sequence:

>360_bases
GTGGTTAAGCTGAACTTTTCAAGGGAGTTACGTTTATTAACTCCCATTCAATTCAAAAATGTTTTCGAACAGCCATTCAG
AGCTAGTACTCCCGAAATTACAATCCTTGCTAGAAAAAATAATCTTGAACATCCGCGTTTAGGTTTGACCGTTGCTAAAA
AACATTTAAAACGCGCCCACGAGCGTAATCGAATTAAACGCTTAGTACGAGAAAGTTTTCGTTTATCACAGCATCGCTTG
CCTGCTTATGATTTTGTTTTTGTAGCTAAAAATGGTATTGGAAAACTCGACAATAGCGCATTTGCACAAATACTCGAAAA
ATTATGGCAGAGACACATTCGCTTGGCACAAAAATCTTAA

Upstream 100 bases:

>100_bases
CGGTTTCCGTGCTCGTATGGCAACTAAAAATGGCCGTCAAGTTTTAGCACGTCGCCGTGCTAAAGGTCGTAAAAGTTTAT
CTGCATAATCACAATTCTTA

Downstream 100 bases:

>100_bases
TTAAGATTATTCGTCTTTATCAAATTATGATTAGTCCGTTTATTGGGGCTCGTTGTCGGTTTGTACCTACTTGTTCTTGC
TATGGTATTGAAGCATTAAA

Product: ribonuclease P

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5

Number of amino acids: Translated: 119; Mature: 119

Protein sequence:

>119_residues
MVKLNFSRELRLLTPIQFKNVFEQPFRASTPEITILARKNNLEHPRLGLTVAKKHLKRAHERNRIKRLVRESFRLSQHRL
PAYDFVFVAKNGIGKLDNSAFAQILEKLWQRHIRLAQKS

Sequences:

>Translated_119_residues
MVKLNFSRELRLLTPIQFKNVFEQPFRASTPEITILARKNNLEHPRLGLTVAKKHLKRAHERNRIKRLVRESFRLSQHRL
PAYDFVFVAKNGIGKLDNSAFAQILEKLWQRHIRLAQKS
>Mature_119_residues
MVKLNFSRELRLLTPIQFKNVFEQPFRASTPEITILARKNNLEHPRLGLTVAKKHLKRAHERNRIKRLVRESFRLSQHRL
PAYDFVFVAKNGIGKLDNSAFAQILEKLWQRHIRLAQKS

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family

Homologues:

Organism=Escherichia coli, GI1790139, Length=119, Percent_Identity=70.5882352941177, Blast_Score=171, Evalue=2e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNPA_HAEI8 (Q4QLR2)

Other databases:

- EMBL:   CP000057
- RefSeq:   YP_248695.1
- ProteinModelPortal:   Q4QLR2
- SMR:   Q4QLR2
- STRING:   Q4QLR2
- GeneID:   3430460
- GenomeReviews:   CP000057_GR
- KEGG:   hit:NTHI1173
- eggNOG:   COG0594
- HOGENOM:   HBG728160
- OMA:   LVIGKKS
- PhylomeDB:   Q4QLR2
- ProtClustDB:   PRK01732
- BioCyc:   HINF281310:NTHI1173-MONOMER
- HAMAP:   MF_00227
- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- InterPro:   IPR020539
- Gene3D:   G3DSA:3.30.230.10
- ProDom:   PD003629
- TIGRFAMs:   TIGR00188

Pfam domain/function: PF00825 Ribonuclease_P; SSF54211 Ribosomal_S5_D2-typ_fold

EC number: =3.1.26.5

Molecular weight: Translated: 14081; Mature: 14081

Theoretical pI: Translated: 12.04; Mature: 12.04

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKLNFSRELRLLTPIQFKNVFEQPFRASTPEITILARKNNLEHPRLGLTVAKKHLKRAH
CEECCCCCCCCEECCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHH
ERNRIKRLVRESFRLSQHRLPAYDFVFVAKNGIGKLDNSAFAQILEKLWQRHIRLAQKS
HHHHHHHHHHHHHHHHHCCCCCHHEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVKLNFSRELRLLTPIQFKNVFEQPFRASTPEITILARKNNLEHPRLGLTVAKKHLKRAH
CEECCCCCCCCEECCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHH
ERNRIKRLVRESFRLSQHRLPAYDFVFVAKNGIGKLDNSAFAQILEKLWQRHIRLAQKS
HHHHHHHHHHHHHHHHHCCCCCHHEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA