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The map label for this gene is slmA

Identifier: 148828132

GI number: 148828132

Start: 1544899

End: 1545555

Strand: Direct

Name: slmA

Synonym: CGSHiGG_08350

Alternate gene names: 148828132

Gene position: 1544899-1545555 (Clockwise)

Preceding gene: 148828131

Following gene: 148828133

Centisome position: 81.86

GC content: 38.81

Gene sequence:

>657_bases
ATGGTAGAAGAACAATTATCTTTATCAGGCGTAGAAGAAATTGCGCCTAAAATTGAAACACCGAAAATTGAAAAAAGAAC
GGTAAAAGAACGTCGTCAGCAAGTGCTTACAGTATTGATACATATGCTTCATTCTGAACGTGGAATGGAAAGAATGACAA
CCGCTCGTCTAGCAAAAGAAGTTGGTGTGTCGGAAGCTGCGTTATATCGTTACTTTCCAAGCAAAACAAAAATGTTTGAA
GCACTAATTGAACATATTGAAAGTACTTTGCTGAGCCGAATTACAGCGTCAATGCGTAACGAAACTCAAACAATGAATCG
CATTCACGACATTTTACAAACAATTTTGGATTTTGCTCGAAAAAATCCCGGCTTAACACGTGTTCTAACAGGTCACGCGT
TAATGTTTGAAGAAGCGCAATTACAAGCACGTGTGGCACAATTTTTCGATCGTCTTGAGATGCAGTTTGTCAATATTTTG
CAAATGCGTAAATTACGTGAAGGGCGTGCTTTCAACGTGGATGAACGTATAATTGCCTCACATTTAGTGACACTCTGCGA
AGGACAATTTATGCGCTATGTTCGTACAAATTTCCGTCTGAATTCAAGTCAGTCTTTTGAACAACAATGGCGTTTTATCG
AGCCACTTTTTGCCTAA

Upstream 100 bases:

>100_bases
TTTCGTGCCAGTAGTACAAGCTGAATTTAATATTGTAGAAGATTTTCAACAAACCGAACGTGGAGAAGGCGGTTTCGGTC
ATTCAGGTAAACAATAATTT

Downstream 100 bases:

>100_bases
TTGACTTTACCGAGTAAATATATGATTATTCCTTGGCAAGAACTGGAAGCAGAAACATTAGATAATATCGTAGAAAGCGT
GATTTTACGCGAAGGAACCG

Product: nucleoid occlusion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MVEEQLSLSGVEEIAPKIETPKIEKRTVKERRQQVLTVLIHMLHSERGMERMTTARLAKEVGVSEAALYRYFPSKTKMFE
ALIEHIESTLLSRITASMRNETQTMNRIHDILQTILDFARKNPGLTRVLTGHALMFEEAQLQARVAQFFDRLEMQFVNIL
QMRKLREGRAFNVDERIIASHLVTLCEGQFMRYVRTNFRLNSSQSFEQQWRFIEPLFA

Sequences:

>Translated_218_residues
MVEEQLSLSGVEEIAPKIETPKIEKRTVKERRQQVLTVLIHMLHSERGMERMTTARLAKEVGVSEAALYRYFPSKTKMFE
ALIEHIESTLLSRITASMRNETQTMNRIHDILQTILDFARKNPGLTRVLTGHALMFEEAQLQARVAQFFDRLEMQFVNIL
QMRKLREGRAFNVDERIIASHLVTLCEGQFMRYVRTNFRLNSSQSFEQQWRFIEPLFA
>Mature_218_residues
MVEEQLSLSGVEEIAPKIETPKIEKRTVKERRQQVLTVLIHMLHSERGMERMTTARLAKEVGVSEAALYRYFPSKTKMFE
ALIEHIESTLLSRITASMRNETQTMNRIHDILQTILDFARKNPGLTRVLTGHALMFEEAQLQARVAQFFDRLEMQFVNIL
QMRKLREGRAFNVDERIIASHLVTLCEGQFMRYVRTNFRLNSSQSFEQQWRFIEPLFA

Specific function: Required for nucleoid occlusion (NO) phenomenon, which cooperates in the proper positioning of the ftsZ/septal ring at midcell during cell division

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm, nucleoid

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI87082302, Length=191, Percent_Identity=47.1204188481675, Blast_Score=186, Evalue=1e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SLMA_HAEI8 (Q4QLV2)

Other databases:

- EMBL:   CP000057
- RefSeq:   YP_248655.1
- ProteinModelPortal:   Q4QLV2
- STRING:   Q4QLV2
- GeneID:   3430420
- GenomeReviews:   CP000057_GR
- KEGG:   hit:NTHI1128
- eggNOG:   COG1309
- HOGENOM:   HBG297015
- OMA:   RSEFRYR
- PhylomeDB:   Q4QLV2
- ProtClustDB:   PRK09480
- BioCyc:   HINF281310:NTHI1128-MONOMER
- GO:   GO:0005737
- GO:   GO:0009295
- HAMAP:   MF_01839
- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647
- Gene3D:   G3DSA:1.10.357.10

Pfam domain/function: PF00440 TetR_N; SSF46689 Homeodomain_like; SSF48498 TetR_like_C

EC number: NA

Molecular weight: Translated: 25577; Mature: 25577

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: PS01081 HTH_TETR_1; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVEEQLSLSGVEEIAPKIETPKIEKRTVKERRQQVLTVLIHMLHSERGMERMTTARLAKE
CCCCHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGVSEAALYRYFPSKTKMFEALIEHIESTLLSRITASMRNETQTMNRIHDILQTILDFAR
HCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KNPGLTRVLTGHALMFEEAQLQARVAQFFDRLEMQFVNILQMRKLREGRAFNVDERIIAS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
HLVTLCEGQFMRYVRTNFRLNSSQSFEQQWRFIEPLFA
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MVEEQLSLSGVEEIAPKIETPKIEKRTVKERRQQVLTVLIHMLHSERGMERMTTARLAKE
CCCCHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGVSEAALYRYFPSKTKMFEALIEHIESTLLSRITASMRNETQTMNRIHDILQTILDFAR
HCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KNPGLTRVLTGHALMFEEAQLQARVAQFFDRLEMQFVNILQMRKLREGRAFNVDERIIAS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
HLVTLCEGQFMRYVRTNFRLNSSQSFEQQWRFIEPLFA
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA