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The map label for this gene is nrfF [H]

Identifier: 148828111

GI number: 148828111

Start: 1523587

End: 1524741

Strand: Reverse

Name: nrfF [H]

Synonym: CGSHiGG_08235

Alternate gene names: 148828111

Gene position: 1524741-1523587 (Counterclockwise)

Preceding gene: 148828112

Following gene: 148828110

Centisome position: 80.79

GC content: 38.35

Gene sequence:

>1155_bases
ATGAAAAGTATATTAGATATTTTTACTCGCGGTTTTATTCAGGTTCAAAAAACAGTCTTTTTTGCAACCGCACTTTTATT
CGCATTTTCCTTATTCGCCCGAGCGGAAATGGTGGATACCTATCAATTTCAAAATCAAGATGATCGTACTCGCGCCGTAG
AGCTGGCAAAATCTTTACGCTGCCCCCAATGTCAAAACCAAAATTTGGTGGAATCTAATTCTCCAATTGCTTATGACTTG
CGTCTTGAAGTGTACAAAATGGTGGATGAGGGCAAAAGCAATCAGCAAATTATCGATAAAATGACGGCTAGATTTGGTGA
TTTTGTGAATTACAAACCGCCATTCAAATGGAATACGGCGTTGTTATGGTTATTGCCAGTCTCCCTTTTAATTTTAGCTG
CAGTATTGCTTTATTTCTCAAATAGGAAAAAACAGTTTTCAGAAAAAGTGGTTGCACAACAACTAGAGAATGATGAAATA
ATTTCCCTCCCCTCAACCTTTGGCAGCTCCCCCCGCAAGCAAGGGGAGCCAAGTAAACTTTCTAAGGGAAAAGTGAATAG
CAAAATTTATTTTGTGCTTTTTACTTTACTCATCGCTATTCCAGCTACTTATTATTTTTCCCTTGATCGTTTTAGTCGTG
TTCAACAAGGCGAGCAATCGATGATTGAGCAACATAATCAAAATGTTGAAATGAATGATGAACACAAAAATGAAAATGTG
ATTGAGAAGCTCCAAAATAAACTGCGTACTGATCCGAATAATGCGGAAACTTGGCTTCAACTTGGGGAAGCCTATGTGCA
GAATAATGAATTTGATAGCGCGCTTGTGGCTTATTCTAATGCAGAAAAATTGTCAGGCAGTAAACCTAATATTTTAGGCT
TGGCAGCCACCGCACTTTATTATCAAGCAGGTCAGCAAATGACCCCAAAAGTCGAACAACTTTTGAATGAAGCTTTGGCA
AAAGATAAAAATGAAGTATCTAGTCTTTCTTTGCTGGCTACGATTGCCTTAGAAAATCGTCAATATCCACAGGCCAGTGC
GTATTTACAGCAGTTATTAGATTCAGGTAATGCGGCAGTGGATCGTCGTTCAGTTATTCAACGAATGAAGATGTTAGATT
TTTTACAACGTGGTGAAAAAGGACAAAATCCGTGA

Upstream 100 bases:

>100_bases
TAGATGAAAATGGTGTGATTCGTTATCGCCATTCTGGTTTACTGGATAAAGCAACTTGGCAAACGGTATTTTTGCCGAAA
ATTGAAGCATTGAAGAACAA

Downstream 100 bases:

>100_bases
GCCAATATTCTGAAAACATTATTATTGGTGCGGGTGCGGCAGGATTATTTTGTGCCGCACAATTGGCTAAGCTAGGCAAG
TCGGTGACAGTTTTCGACAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MKSILDIFTRGFIQVQKTVFFATALLFAFSLFARAEMVDTYQFQNQDDRTRAVELAKSLRCPQCQNQNLVESNSPIAYDL
RLEVYKMVDEGKSNQQIIDKMTARFGDFVNYKPPFKWNTALLWLLPVSLLILAAVLLYFSNRKKQFSEKVVAQQLENDEI
ISLPSTFGSSPRKQGEPSKLSKGKVNSKIYFVLFTLLIAIPATYYFSLDRFSRVQQGEQSMIEQHNQNVEMNDEHKNENV
IEKLQNKLRTDPNNAETWLQLGEAYVQNNEFDSALVAYSNAEKLSGSKPNILGLAATALYYQAGQQMTPKVEQLLNEALA
KDKNEVSSLSLLATIALENRQYPQASAYLQQLLDSGNAAVDRRSVIQRMKMLDFLQRGEKGQNP

Sequences:

>Translated_384_residues
MKSILDIFTRGFIQVQKTVFFATALLFAFSLFARAEMVDTYQFQNQDDRTRAVELAKSLRCPQCQNQNLVESNSPIAYDL
RLEVYKMVDEGKSNQQIIDKMTARFGDFVNYKPPFKWNTALLWLLPVSLLILAAVLLYFSNRKKQFSEKVVAQQLENDEI
ISLPSTFGSSPRKQGEPSKLSKGKVNSKIYFVLFTLLIAIPATYYFSLDRFSRVQQGEQSMIEQHNQNVEMNDEHKNENV
IEKLQNKLRTDPNNAETWLQLGEAYVQNNEFDSALVAYSNAEKLSGSKPNILGLAATALYYQAGQQMTPKVEQLLNEALA
KDKNEVSSLSLLATIALENRQYPQASAYLQQLLDSGNAAVDRRSVIQRMKMLDFLQRGEKGQNP
>Mature_384_residues
MKSILDIFTRGFIQVQKTVFFATALLFAFSLFARAEMVDTYQFQNQDDRTRAVELAKSLRCPQCQNQNLVESNSPIAYDL
RLEVYKMVDEGKSNQQIIDKMTARFGDFVNYKPPFKWNTALLWLLPVSLLILAAVLLYFSNRKKQFSEKVVAQQLENDEI
ISLPSTFGSSPRKQGEPSKLSKGKVNSKIYFVLFTLLIAIPATYYFSLDRFSRVQQGEQSMIEQHNQNVEMNDEHKNENV
IEKLQNKLRTDPNNAETWLQLGEAYVQNNEFDSALVAYSNAEKLSGSKPNILGLAATALYYQAGQQMTPKVEQLLNEALA
KDKNEVSSLSLLATIALENRQYPQASAYLQQLLDSGNAAVDRRSVIQRMKMLDFLQRGEKGQNP

Specific function: Possible subunit of a heme lyase [H]

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=356, Percent_Identity=26.685393258427, Blast_Score=122, Evalue=5e-29,
Organism=Escherichia coli, GI1790512, Length=87, Percent_Identity=55.1724137931034, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1790513, Length=140, Percent_Identity=37.1428571428571, Blast_Score=101, Evalue=6e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616
- InterPro:   IPR017565
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 43702; Mature: 43702

Theoretical pI: Translated: 8.54; Mature: 8.54

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSILDIFTRGFIQVQKTVFFATALLFAFSLFARAEMVDTYQFQNQDDRTRAVELAKSLR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
CPQCQNQNLVESNSPIAYDLRLEVYKMVDEGKSNQQIIDKMTARFGDFVNYKPPFKWNTA
CCCCCCCCCCCCCCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHH
LLWLLPVSLLILAAVLLYFSNRKKQFSEKVVAQQLENDEIISLPSTFGSSPRKQGEPSKL
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCEEECCHHHCCCCCCCCCCCCC
SKGKVNSKIYFVLFTLLIAIPATYYFSLDRFSRVQQGEQSMIEQHNQNVEMNDEHKNENV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
IEKLQNKLRTDPNNAETWLQLGEAYVQNNEFDSALVAYSNAEKLSGSKPNILGLAATALY
HHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHCCCHHHCCCCCCCHHHHHHHHHH
YQAGQQMTPKVEQLLNEALAKDKNEVSSLSLLATIALENRQYPQASAYLQQLLDSGNAAV
HHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCH
DRRSVIQRMKMLDFLQRGEKGQNP
HHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKSILDIFTRGFIQVQKTVFFATALLFAFSLFARAEMVDTYQFQNQDDRTRAVELAKSLR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
CPQCQNQNLVESNSPIAYDLRLEVYKMVDEGKSNQQIIDKMTARFGDFVNYKPPFKWNTA
CCCCCCCCCCCCCCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHH
LLWLLPVSLLILAAVLLYFSNRKKQFSEKVVAQQLENDEIISLPSTFGSSPRKQGEPSKL
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCEEECCHHHCCCCCCCCCCCCC
SKGKVNSKIYFVLFTLLIAIPATYYFSLDRFSRVQQGEQSMIEQHNQNVEMNDEHKNENV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
IEKLQNKLRTDPNNAETWLQLGEAYVQNNEFDSALVAYSNAEKLSGSKPNILGLAATALY
HHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHCCCHHHCCCCCCCHHHHHHHHHH
YQAGQQMTPKVEQLLNEALAKDKNEVSSLSLLATIALENRQYPQASAYLQQLLDSGNAAV
HHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCH
DRRSVIQRMKMLDFLQRGEKGQNP
HHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]