BacMap

Definition	Haemophilus influenzae PittGG chromosome, complete genome.
Accession	NC_009567
Length	1,887,192

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The map label for this gene is srmB [H]

Identifier: 148827621

GI number: 148827621

Start: 967717

End: 969036

Strand: Reverse

Name: srmB [H]

Synonym: CGSHiGG_05320

Alternate gene names: 148827621

Gene position: 969036-967717 (Counterclockwise)

Preceding gene: 148827623

Following gene: 148827620

Centisome position: 51.35

GC content: 41.36

Gene sequence:

>1320_bases
ATGAATTTATCCCAATTTGAACAATTTGATCTTTCTCCTGAGCTTTTAAAGGCGCTTGAGAAAAAAGGTTATTCCCGCCC
AACAGCTATTCAAATGGAAGCCATTCCTGCCGCAATGGAAGCGCGTGATGTGTTAGGCTCTGCACCAACGGGAACAGGAA
AAACGGCTGCTTTTTTATTACCTGCGCTACAACATTTATTGGATTATCCACGCCGTAAACCAGGCCCACCGCGTATTTTG
GTATTAACGCCAACCCGTGAATTGGCAATGCAAGTGGCAGAACAAGCGGAAGAATTAGCGCAGTTTACCCATTTAAATAT
TGCGACAATTACAGGTGGCGTGGCGTATCAAAATCACGGTGATGTGTTCAATACCAATCAAGATTTGGTGGTGGCTACGC
CTGGCCGTTTATTGCAATACATTAAGGAAGAAAATTTTGATTGCCGTTCCGTTGAAATGCTGATTTTTGACGAAGCCGAT
AGAATGTTACAAATGGGATTTGGACAAGATGCGGAAAAAATTGCAGCTGAAACCCGTTGGCGGAAACAAACCTTATTATT
TTCTGCAACATTGGAAGGGGAGTTGTTGGTCGATTTCGCGGATCGTTTGTTGAATGATCCTGTGAGAGTAGATGCGGAAC
CAAGCCGTCGAGAGAGAAAAAAAATCAACCAATGGTATTACCATGCAGACAGCAATGAACACAAAATCAAATTGCTCGCG
CGTTTTATTGAAACTGAAGAAGTAACCCGTGGAATTGTGTTTATTCGTCGTCGTGAAGATGCACGAGAACTTTCTGAAAC
ATTGCGTAAACGAGGCATTCGTTCTGCGTATTTAGAAGGTAAAATGGCACAAACTCAACGTAATAATGCGATTGATAAAT
TGAAATCAGGTATTGTGACGGTATTGGTTGCAACAGATGTAGCTGCGCGTGGTATTGATATTGATGATGTAAGCCATGTG
ATGAATTTTGATTTGCCTTATAGTGCGGATACTTATTTGCATCGAATAGGACGTACCGCGCGAGCAGGCAAAAAAGGCAC
GGCGGTCTCTTTTGTCGAAGCCCATGATTACAAGTTGCTAGGTAAAATCAAACGCTATACCGAAGAAATTTTAAAGGTGC
GCATTTTAGCAGGTTTAGAACCTCGTACTAAGCCACCAAAAGATGGTGAAGTGAAATCTGTCAGCAAAAAACAAAAGGCA
CGCATTAAAGAAAAACGTGAAGAAAAGAAAAAAACAGAGGCAAAGAAAAAAGTAAAATTGCGTCATAAGGATACGAAAAA
TATCGGCAAACGACGCAAGTCAAGCAACAGTAATATTTAA

Upstream 100 bases:

>100_bases
TATGGAATTGTTTAAAGGTAAATCTGCTCATAAATTTTTCGTAAATTGACCGCACTTTCAGGTATAATCCTCGCCAATTT
TAACAAAGAACCGCACAATA

Downstream 100 bases:

>100_bases
TTAGGTGTGTAAATTCTGCTTGAGGCAAATTTTACATAGGAAATTTTTCTATATTGCTTTAACGTTTTTTTATAGTAGAA
GTATATACTCAGTTATGGTT

Product: ATP-dependent RNA helicase SrmB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MNLSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEARDVLGSAPTGTGKTAAFLLPALQHLLDYPRRKPGPPRIL
VLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEAD
RMLQMGFGQDAEKIAAETRWRKQTLLFSATLEGELLVDFADRLLNDPVRVDAEPSRRERKKINQWYYHADSNEHKIKLLA
RFIETEEVTRGIVFIRRREDARELSETLRKRGIRSAYLEGKMAQTQRNNAIDKLKSGIVTVLVATDVAARGIDIDDVSHV
MNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKIKRYTEEILKVRILAGLEPRTKPPKDGEVKSVSKKQKA
RIKEKREEKKKTEAKKKVKLRHKDTKNIGKRRKSSNSNI

Sequences:

>Translated_439_residues
MNLSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEARDVLGSAPTGTGKTAAFLLPALQHLLDYPRRKPGPPRIL
VLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEAD
RMLQMGFGQDAEKIAAETRWRKQTLLFSATLEGELLVDFADRLLNDPVRVDAEPSRRERKKINQWYYHADSNEHKIKLLA
RFIETEEVTRGIVFIRRREDARELSETLRKRGIRSAYLEGKMAQTQRNNAIDKLKSGIVTVLVATDVAARGIDIDDVSHV
MNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKIKRYTEEILKVRILAGLEPRTKPPKDGEVKSVSKKQKA
RIKEKREEKKKTEAKKKVKLRHKDTKNIGKRRKSSNSNI
>Mature_439_residues
MNLSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEARDVLGSAPTGTGKTAAFLLPALQHLLDYPRRKPGPPRIL
VLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEAD
RMLQMGFGQDAEKIAAETRWRKQTLLFSATLEGELLVDFADRLLNDPVRVDAEPSRRERKKINQWYYHADSNEHKIKLLA
RFIETEEVTRGIVFIRRREDARELSETLRKRGIRSAYLEGKMAQTQRNNAIDKLKSGIVTVLVATDVAARGIDIDDVSHV
MNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKIKRYTEEILKVRILAGLEPRTKPPKDGEVKSVSKKQKA
RIKEKREEKKKTEAKKKVKLRHKDTKNIGKRRKSSNSNI

Specific function: RNA-dependent ATPase activity. Probably interacts with 23S ribosomal RNA [H]

COG id: COG0513

COG function: function code LKJ; Superfamily II DNA and RNA helicases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Homo sapiens, GI45446747, Length=367, Percent_Identity=35.6948228882834, Blast_Score=238, Evalue=7e-63,
Organism=Homo sapiens, GI45446743, Length=367, Percent_Identity=35.6948228882834, Blast_Score=238, Evalue=7e-63,
Organism=Homo sapiens, GI224593278, Length=382, Percent_Identity=38.2198952879581, Blast_Score=238, Evalue=1e-62,
Organism=Homo sapiens, GI20149629, Length=440, Percent_Identity=33.6363636363636, Blast_Score=234, Evalue=1e-61,
Organism=Homo sapiens, GI164419743, Length=350, Percent_Identity=37.4285714285714, Blast_Score=226, Evalue=3e-59,
Organism=Homo sapiens, GI51094101, Length=350, Percent_Identity=37.4285714285714, Blast_Score=226, Evalue=3e-59,
Organism=Homo sapiens, GI31542656, Length=369, Percent_Identity=37.1273712737127, Blast_Score=222, Evalue=5e-58,
Organism=Homo sapiens, GI7661920, Length=361, Percent_Identity=32.1329639889197, Blast_Score=215, Evalue=7e-56,
Organism=Homo sapiens, GI41327771, Length=387, Percent_Identity=32.8165374677003, Blast_Score=215, Evalue=7e-56,
Organism=Homo sapiens, GI4758138, Length=358, Percent_Identity=33.7988826815642, Blast_Score=211, Evalue=1e-54,
Organism=Homo sapiens, GI148613856, Length=380, Percent_Identity=33.1578947368421, Blast_Score=211, Evalue=2e-54,
Organism=Homo sapiens, GI38201710, Length=380, Percent_Identity=33.1578947368421, Blast_Score=211, Evalue=2e-54,
Organism=Homo sapiens, GI188035877, Length=364, Percent_Identity=35.1648351648352, Blast_Score=209, Evalue=5e-54,
Organism=Homo sapiens, GI41327773, Length=380, Percent_Identity=32.6315789473684, Blast_Score=206, Evalue=2e-53,
Organism=Homo sapiens, GI41327776, Length=440, Percent_Identity=31.5909090909091, Blast_Score=205, Evalue=5e-53,
Organism=Homo sapiens, GI222352149, Length=369, Percent_Identity=33.8753387533875, Blast_Score=204, Evalue=1e-52,
Organism=Homo sapiens, GI55749865, Length=361, Percent_Identity=32.9639889196676, Blast_Score=202, Evalue=5e-52,
Organism=Homo sapiens, GI262118318, Length=359, Percent_Identity=33.983286908078, Blast_Score=199, Evalue=5e-51,
Organism=Homo sapiens, GI21071032, Length=373, Percent_Identity=31.6353887399464, Blast_Score=197, Evalue=1e-50,
Organism=Homo sapiens, GI216548263, Length=359, Percent_Identity=34.5403899721448, Blast_Score=197, Evalue=2e-50,
Organism=Homo sapiens, GI13518015, Length=359, Percent_Identity=34.5403899721448, Blast_Score=197, Evalue=2e-50,
Organism=Homo sapiens, GI262231852, Length=359, Percent_Identity=34.5403899721448, Blast_Score=197, Evalue=2e-50,
Organism=Homo sapiens, GI21040371, Length=367, Percent_Identity=31.8801089918256, Blast_Score=196, Evalue=5e-50,
Organism=Homo sapiens, GI8922886, Length=377, Percent_Identity=32.8912466843501, Blast_Score=195, Evalue=6e-50,
Organism=Homo sapiens, GI164664518, Length=356, Percent_Identity=32.5842696629214, Blast_Score=195, Evalue=7e-50,
Organism=Homo sapiens, GI6005743, Length=377, Percent_Identity=33.1564986737401, Blast_Score=195, Evalue=8e-50,
Organism=Homo sapiens, GI4758112, Length=367, Percent_Identity=32.1525885558583, Blast_Score=192, Evalue=5e-49,
Organism=Homo sapiens, GI18375623, Length=367, Percent_Identity=32.1525885558583, Blast_Score=192, Evalue=5e-49,
Organism=Homo sapiens, GI301171467, Length=374, Percent_Identity=33.9572192513369, Blast_Score=191, Evalue=1e-48,
Organism=Homo sapiens, GI87196351, Length=374, Percent_Identity=33.9572192513369, Blast_Score=191, Evalue=2e-48,
Organism=Homo sapiens, GI301171475, Length=374, Percent_Identity=33.9572192513369, Blast_Score=190, Evalue=2e-48,
Organism=Homo sapiens, GI169881239, Length=372, Percent_Identity=33.6021505376344, Blast_Score=189, Evalue=6e-48,
Organism=Homo sapiens, GI13514809, Length=372, Percent_Identity=33.6021505376344, Blast_Score=189, Evalue=6e-48,
Organism=Homo sapiens, GI13514831, Length=352, Percent_Identity=34.6590909090909, Blast_Score=186, Evalue=5e-47,
Organism=Homo sapiens, GI62241022, Length=356, Percent_Identity=33.4269662921348, Blast_Score=183, Evalue=3e-46,
Organism=Homo sapiens, GI83700235, Length=366, Percent_Identity=31.6939890710383, Blast_Score=183, Evalue=3e-46,
Organism=Homo sapiens, GI38569503, Length=378, Percent_Identity=32.010582010582, Blast_Score=182, Evalue=4e-46,
Organism=Homo sapiens, GI38569505, Length=371, Percent_Identity=32.3450134770889, Blast_Score=182, Evalue=6e-46,
Organism=Homo sapiens, GI9506931, Length=464, Percent_Identity=30.3879310344828, Blast_Score=181, Evalue=2e-45,
Organism=Homo sapiens, GI4503529, Length=366, Percent_Identity=31.4207650273224, Blast_Score=179, Evalue=5e-45,
Organism=Homo sapiens, GI62241024, Length=335, Percent_Identity=33.4328358208955, Blast_Score=171, Evalue=1e-42,
Organism=Homo sapiens, GI164419732, Length=364, Percent_Identity=30.7692307692308, Blast_Score=169, Evalue=6e-42,
Organism=Homo sapiens, GI50659095, Length=370, Percent_Identity=31.0810810810811, Blast_Score=166, Evalue=4e-41,
Organism=Homo sapiens, GI13129006, Length=377, Percent_Identity=29.4429708222812, Blast_Score=164, Evalue=1e-40,
Organism=Homo sapiens, GI38327634, Length=334, Percent_Identity=33.2335329341317, Blast_Score=164, Evalue=2e-40,
Organism=Homo sapiens, GI41327779, Length=371, Percent_Identity=35.0404312668464, Blast_Score=162, Evalue=8e-40,
Organism=Homo sapiens, GI256223453, Length=356, Percent_Identity=30.6179775280899, Blast_Score=158, Evalue=8e-39,
Organism=Homo sapiens, GI17505907, Length=403, Percent_Identity=28.5359801488834, Blast_Score=146, Evalue=3e-35,
Organism=Homo sapiens, GI9966805, Length=327, Percent_Identity=30.8868501529052, Blast_Score=143, Evalue=3e-34,
Organism=Homo sapiens, GI154759257, Length=410, Percent_Identity=29.0243902439024, Blast_Score=136, Evalue=4e-32,
Organism=Homo sapiens, GI4826686, Length=337, Percent_Identity=27.5964391691395, Blast_Score=117, Evalue=3e-26,
Organism=Homo sapiens, GI256773275, Length=395, Percent_Identity=29.1139240506329, Blast_Score=115, Evalue=7e-26,
Organism=Homo sapiens, GI20336298, Length=215, Percent_Identity=33.4883720930233, Blast_Score=107, Evalue=2e-23,
Organism=Escherichia coli, GI1788930, Length=439, Percent_Identity=65.1480637813212, Blast_Score=553, Evalue=1e-159,
Organism=Escherichia coli, GI1787016, Length=378, Percent_Identity=39.4179894179894, Blast_Score=273, Evalue=2e-74,
Organism=Escherichia coli, GI87082221, Length=363, Percent_Identity=41.3223140495868, Blast_Score=263, Evalue=2e-71,
Organism=Escherichia coli, GI1790214, Length=382, Percent_Identity=37.17277486911, Blast_Score=240, Evalue=1e-64,
Organism=Escherichia coli, GI1787605, Length=343, Percent_Identity=37.3177842565598, Blast_Score=206, Evalue=2e-54,
Organism=Caenorhabditis elegans, GI17552642, Length=371, Percent_Identity=35.8490566037736, Blast_Score=241, Evalue=7e-64,
Organism=Caenorhabditis elegans, GI86570094, Length=392, Percent_Identity=36.734693877551, Blast_Score=231, Evalue=6e-61,
Organism=Caenorhabditis elegans, GI17555296, Length=361, Percent_Identity=36.8421052631579, Blast_Score=231, Evalue=8e-61,
Organism=Caenorhabditis elegans, GI17510559, Length=405, Percent_Identity=34.5679012345679, Blast_Score=231, Evalue=8e-61,
Organism=Caenorhabditis elegans, GI71999646, Length=349, Percent_Identity=36.9627507163324, Blast_Score=224, Evalue=6e-59,
Organism=Caenorhabditis elegans, GI71999644, Length=349, Percent_Identity=36.9627507163324, Blast_Score=224, Evalue=7e-59,
Organism=Caenorhabditis elegans, GI71995724, Length=361, Percent_Identity=33.2409972299169, Blast_Score=223, Evalue=1e-58,
Organism=Caenorhabditis elegans, GI17507121, Length=361, Percent_Identity=32.9639889196676, Blast_Score=223, Evalue=2e-58,
Organism=Caenorhabditis elegans, GI32565321, Length=394, Percent_Identity=34.2639593908629, Blast_Score=219, Evalue=3e-57,
Organism=Caenorhabditis elegans, GI71987143, Length=366, Percent_Identity=32.7868852459016, Blast_Score=218, Evalue=7e-57,
Organism=Caenorhabditis elegans, GI115533224, Length=352, Percent_Identity=35.7954545454545, Blast_Score=213, Evalue=1e-55,
Organism=Caenorhabditis elegans, GI17510307, Length=364, Percent_Identity=33.7912087912088, Blast_Score=212, Evalue=3e-55,
Organism=Caenorhabditis elegans, GI17510309, Length=364, Percent_Identity=33.7912087912088, Blast_Score=212, Evalue=4e-55,
Organism=Caenorhabditis elegans, GI71995514, Length=364, Percent_Identity=33.7912087912088, Blast_Score=211, Evalue=5e-55,
Organism=Caenorhabditis elegans, GI17509811, Length=382, Percent_Identity=33.7696335078534, Blast_Score=201, Evalue=4e-52,
Organism=Caenorhabditis elegans, GI17537549, Length=368, Percent_Identity=33.695652173913, Blast_Score=198, Evalue=4e-51,
Organism=Caenorhabditis elegans, GI17507945, Length=400, Percent_Identity=31.5, Blast_Score=194, Evalue=9e-50,
Organism=Caenorhabditis elegans, GI71995718, Length=366, Percent_Identity=33.0601092896175, Blast_Score=190, Evalue=1e-48,
Organism=Caenorhabditis elegans, GI17507877, Length=379, Percent_Identity=32.4538258575198, Blast_Score=190, Evalue=1e-48,
Organism=Caenorhabditis elegans, GI17552114, Length=386, Percent_Identity=30.5699481865285, Blast_Score=187, Evalue=7e-48,
Organism=Caenorhabditis elegans, GI17507881, Length=382, Percent_Identity=31.151832460733, Blast_Score=186, Evalue=3e-47,
Organism=Caenorhabditis elegans, GI115532548, Length=380, Percent_Identity=31.8421052631579, Blast_Score=185, Evalue=3e-47,
Organism=Caenorhabditis elegans, GI115532546, Length=380, Percent_Identity=31.8421052631579, Blast_Score=184, Evalue=6e-47,
Organism=Caenorhabditis elegans, GI17507879, Length=381, Percent_Identity=31.758530183727, Blast_Score=183, Evalue=1e-46,
Organism=Caenorhabditis elegans, GI71982858, Length=367, Percent_Identity=30.7901907356948, Blast_Score=180, Evalue=1e-45,
Organism=Caenorhabditis elegans, GI17507641, Length=398, Percent_Identity=32.6633165829146, Blast_Score=176, Evalue=3e-44,
Organism=Caenorhabditis elegans, GI17505370, Length=343, Percent_Identity=33.2361516034985, Blast_Score=167, Evalue=8e-42,
Organism=Caenorhabditis elegans, GI17536099, Length=381, Percent_Identity=30.9711286089239, Blast_Score=167, Evalue=9e-42,
Organism=Caenorhabditis elegans, GI17536101, Length=381, Percent_Identity=31.2335958005249, Blast_Score=167, Evalue=1e-41,
Organism=Caenorhabditis elegans, GI17556951, Length=375, Percent_Identity=31.2, Blast_Score=165, Evalue=4e-41,
Organism=Caenorhabditis elegans, GI17536103, Length=385, Percent_Identity=31.1688311688312, Blast_Score=164, Evalue=7e-41,
Organism=Caenorhabditis elegans, GI17508543, Length=375, Percent_Identity=28.8, Blast_Score=162, Evalue=3e-40,
Organism=Caenorhabditis elegans, GI25148203, Length=454, Percent_Identity=27.5330396475771, Blast_Score=161, Evalue=5e-40,
Organism=Caenorhabditis elegans, GI32564046, Length=375, Percent_Identity=32.2666666666667, Blast_Score=160, Evalue=9e-40,
Organism=Caenorhabditis elegans, GI193206561, Length=352, Percent_Identity=29.8295454545455, Blast_Score=157, Evalue=1e-38,
Organism=Caenorhabditis elegans, GI193208216, Length=382, Percent_Identity=29.5811518324607, Blast_Score=150, Evalue=1e-36,
Organism=Caenorhabditis elegans, GI17553716, Length=358, Percent_Identity=27.6536312849162, Blast_Score=149, Evalue=4e-36,
Organism=Caenorhabditis elegans, GI71990816, Length=387, Percent_Identity=29.9741602067183, Blast_Score=147, Evalue=1e-35,
Organism=Caenorhabditis elegans, GI25148205, Length=381, Percent_Identity=26.509186351706, Blast_Score=119, Evalue=4e-27,
Organism=Caenorhabditis elegans, GI25148291, Length=423, Percent_Identity=23.6406619385343, Blast_Score=112, Evalue=4e-25,
Organism=Caenorhabditis elegans, GI71982862, Length=220, Percent_Identity=32.2727272727273, Blast_Score=108, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI71987152, Length=89, Percent_Identity=44.9438202247191, Blast_Score=86, Evalue=3e-17,
Organism=Saccharomyces cerevisiae, GI6323021, Length=356, Percent_Identity=37.9213483146067, Blast_Score=240, Evalue=3e-64,
Organism=Saccharomyces cerevisiae, GI6321856, Length=380, Percent_Identity=35.2631578947368, Blast_Score=217, Evalue=4e-57,
Organism=Saccharomyces cerevisiae, GI6320224, Length=372, Percent_Identity=32.7956989247312, Blast_Score=215, Evalue=1e-56,
Organism=Saccharomyces cerevisiae, GI6324217, Length=365, Percent_Identity=32.6027397260274, Blast_Score=213, Evalue=7e-56,
Organism=Saccharomyces cerevisiae, GI6321360, Length=368, Percent_Identity=34.5108695652174, Blast_Score=202, Evalue=6e-53,
Organism=Saccharomyces cerevisiae, GI6320041, Length=363, Percent_Identity=33.8842975206612, Blast_Score=198, Evalue=1e-51,
Organism=Saccharomyces cerevisiae, GI6325138, Length=368, Percent_Identity=33.1521739130435, Blast_Score=196, Evalue=6e-51,
Organism=Saccharomyces cerevisiae, GI6323947, Length=371, Percent_Identity=34.2318059299191, Blast_Score=193, Evalue=5e-50,
Organism=Saccharomyces cerevisiae, GI6324778, Length=377, Percent_Identity=31.0344827586207, Blast_Score=191, Evalue=1e-49,
Organism=Saccharomyces cerevisiae, GI6321963, Length=448, Percent_Identity=32.5892857142857, Blast_Score=191, Evalue=2e-49,
Organism=Saccharomyces cerevisiae, GI6320449, Length=389, Percent_Identity=32.133676092545, Blast_Score=190, Evalue=4e-49,
Organism=Saccharomyces cerevisiae, GI6322912, Length=362, Percent_Identity=31.767955801105, Blast_Score=187, Evalue=3e-48,
Organism=Saccharomyces cerevisiae, GI6322323, Length=362, Percent_Identity=31.767955801105, Blast_Score=187, Evalue=3e-48,
Organism=Saccharomyces cerevisiae, GI6322427, Length=357, Percent_Identity=33.3333333333333, Blast_Score=186, Evalue=5e-48,
Organism=Saccharomyces cerevisiae, GI6324620, Length=380, Percent_Identity=30.2631578947368, Blast_Score=184, Evalue=3e-47,
Organism=Saccharomyces cerevisiae, GI6320119, Length=388, Percent_Identity=31.701030927835, Blast_Score=182, Evalue=1e-46,
Organism=Saccharomyces cerevisiae, GI6319618, Length=410, Percent_Identity=30, Blast_Score=174, Evalue=3e-44,
Organism=Saccharomyces cerevisiae, GI6323306, Length=415, Percent_Identity=28.433734939759, Blast_Score=168, Evalue=2e-42,
Organism=Saccharomyces cerevisiae, GI6321267, Length=360, Percent_Identity=31.9444444444444, Blast_Score=165, Evalue=1e-41,
Organism=Saccharomyces cerevisiae, GI6320173, Length=210, Percent_Identity=41.9047619047619, Blast_Score=161, Evalue=2e-40,
Organism=Saccharomyces cerevisiae, GI6319714, Length=476, Percent_Identity=27.3109243697479, Blast_Score=155, Evalue=2e-38,
Organism=Saccharomyces cerevisiae, GI6320400, Length=378, Percent_Identity=29.8941798941799, Blast_Score=150, Evalue=4e-37,
Organism=Saccharomyces cerevisiae, GI6321111, Length=367, Percent_Identity=28.6103542234332, Blast_Score=146, Evalue=7e-36,
Organism=Saccharomyces cerevisiae, GI6324366, Length=362, Percent_Identity=25.9668508287293, Blast_Score=119, Evalue=1e-27,
Organism=Saccharomyces cerevisiae, GI6322876, Length=184, Percent_Identity=29.8913043478261, Blast_Score=77, Evalue=4e-15,
Organism=Drosophila melanogaster, GI21356161, Length=377, Percent_Identity=38.1962864721485, Blast_Score=252, Evalue=3e-67,
Organism=Drosophila melanogaster, GI24662330, Length=368, Percent_Identity=35.8695652173913, Blast_Score=239, Evalue=3e-63,
Organism=Drosophila melanogaster, GI28574962, Length=351, Percent_Identity=36.1823361823362, Blast_Score=228, Evalue=5e-60,
Organism=Drosophila melanogaster, GI24584399, Length=354, Percent_Identity=35.5932203389831, Blast_Score=224, Evalue=8e-59,
Organism=Drosophila melanogaster, GI28575014, Length=354, Percent_Identity=37.2881355932203, Blast_Score=224, Evalue=1e-58,
Organism=Drosophila melanogaster, GI21355075, Length=359, Percent_Identity=34.8189415041783, Blast_Score=220, Evalue=2e-57,
Organism=Drosophila melanogaster, GI24642151, Length=367, Percent_Identity=34.0599455040872, Blast_Score=217, Evalue=1e-56,
Organism=Drosophila melanogaster, GI24645031, Length=361, Percent_Identity=32.9639889196676, Blast_Score=216, Evalue=2e-56,
Organism=Drosophila melanogaster, GI24585582, Length=360, Percent_Identity=34.1666666666667, Blast_Score=215, Evalue=6e-56,
Organism=Drosophila melanogaster, GI24644479, Length=362, Percent_Identity=33.7016574585635, Blast_Score=214, Evalue=1e-55,
Organism=Drosophila melanogaster, GI24644483, Length=362, Percent_Identity=33.7016574585635, Blast_Score=214, Evalue=1e-55,
Organism=Drosophila melanogaster, GI281361218, Length=362, Percent_Identity=33.7016574585635, Blast_Score=214, Evalue=1e-55,
Organism=Drosophila melanogaster, GI24644481, Length=362, Percent_Identity=33.7016574585635, Blast_Score=214, Evalue=1e-55,
Organism=Drosophila melanogaster, GI24644487, Length=362, Percent_Identity=33.7016574585635, Blast_Score=213, Evalue=1e-55,
Organism=Drosophila melanogaster, GI45551833, Length=362, Percent_Identity=33.7016574585635, Blast_Score=213, Evalue=1e-55,
Organism=Drosophila melanogaster, GI24644485, Length=362, Percent_Identity=33.7016574585635, Blast_Score=213, Evalue=1e-55,
Organism=Drosophila melanogaster, GI24584994, Length=385, Percent_Identity=34.2857142857143, Blast_Score=211, Evalue=1e-54,
Organism=Drosophila melanogaster, GI24583281, Length=367, Percent_Identity=32.9700272479564, Blast_Score=202, Evalue=3e-52,
Organism=Drosophila melanogaster, GI24583279, Length=367, Percent_Identity=32.9700272479564, Blast_Score=202, Evalue=4e-52,
Organism=Drosophila melanogaster, GI18857967, Length=365, Percent_Identity=31.5068493150685, Blast_Score=200, Evalue=2e-51,
Organism=Drosophila melanogaster, GI17985987, Length=372, Percent_Identity=34.1397849462366, Blast_Score=197, Evalue=1e-50,
Organism=Drosophila melanogaster, GI17977678, Length=359, Percent_Identity=32.033426183844, Blast_Score=192, Evalue=4e-49,
Organism=Drosophila melanogaster, GI24581954, Length=367, Percent_Identity=32.425068119891, Blast_Score=188, Evalue=5e-48,
Organism=Drosophila melanogaster, GI24581952, Length=367, Percent_Identity=32.425068119891, Blast_Score=188, Evalue=5e-48,
Organism=Drosophila melanogaster, GI24581956, Length=367, Percent_Identity=32.425068119891, Blast_Score=188, Evalue=5e-48,
Organism=Drosophila melanogaster, GI24666101, Length=447, Percent_Identity=31.9910514541387, Blast_Score=188, Evalue=7e-48,
Organism=Drosophila melanogaster, GI17136814, Length=375, Percent_Identity=34.9333333333333, Blast_Score=185, Evalue=4e-47,
Organism=Drosophila melanogaster, GI281365720, Length=312, Percent_Identity=34.6153846153846, Blast_Score=185, Evalue=6e-47,
Organism=Drosophila melanogaster, GI24642822, Length=367, Percent_Identity=33.5149863760218, Blast_Score=178, Evalue=5e-45,
Organism=Drosophila melanogaster, GI24582080, Length=361, Percent_Identity=30.4709141274238, Blast_Score=177, Evalue=1e-44,
Organism=Drosophila melanogaster, GI24582078, Length=361, Percent_Identity=30.4709141274238, Blast_Score=177, Evalue=1e-44,
Organism=Drosophila melanogaster, GI17136248, Length=361, Percent_Identity=30.4709141274238, Blast_Score=177, Evalue=1e-44,
Organism=Drosophila melanogaster, GI24582075, Length=361, Percent_Identity=30.4709141274238, Blast_Score=177, Evalue=1e-44,
Organism=Drosophila melanogaster, GI28571808, Length=361, Percent_Identity=29.9168975069252, Blast_Score=166, Evalue=4e-41,
Organism=Drosophila melanogaster, GI28571809, Length=361, Percent_Identity=29.9168975069252, Blast_Score=166, Evalue=4e-41,
Organism=Drosophila melanogaster, GI21355559, Length=378, Percent_Identity=33.3333333333333, Blast_Score=165, Evalue=7e-41,
Organism=Drosophila melanogaster, GI20130173, Length=456, Percent_Identity=27.4122807017544, Blast_Score=158, Evalue=6e-39,
Organism=Drosophila melanogaster, GI24643725, Length=392, Percent_Identity=29.5918367346939, Blast_Score=158, Evalue=8e-39,
Organism=Drosophila melanogaster, GI17647335, Length=356, Percent_Identity=27.8089887640449, Blast_Score=149, Evalue=3e-36,
Organism=Drosophila melanogaster, GI17136666, Length=419, Percent_Identity=30.7875894988067, Blast_Score=143, Evalue=3e-34,
Organism=Drosophila melanogaster, GI19920478, Length=357, Percent_Identity=29.6918767507003, Blast_Score=129, Evalue=4e-30,
Organism=Drosophila melanogaster, GI24640164, Length=376, Percent_Identity=24.7340425531915, Blast_Score=119, Evalue=4e-27,
Organism=Drosophila melanogaster, GI24668515, Length=338, Percent_Identity=28.698224852071, Blast_Score=112, Evalue=5e-25,
Organism=Drosophila melanogaster, GI28571338, Length=225, Percent_Identity=31.1111111111111, Blast_Score=90, Evalue=3e-18,
Organism=Drosophila melanogaster, GI18859659, Length=225, Percent_Identity=31.1111111111111, Blast_Score=90, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR014021
- InterPro:   IPR000629
- InterPro:   IPR014014 [H]

Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C [H]

EC number: =3.6.4.13 [H]

Molecular weight: Translated: 49862; Mature: 49862

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: PS00039 DEAD_ATP_HELICASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEARDVLGSAPTGTGKTAAFLL
CCCCHHHHCCCCHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHH
PALQHLLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHG
HHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCEEEEEECCEEECCCC
DVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRW
CCCCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHH
RKQTLLFSATLEGELLVDFADRLLNDPVRVDAEPSRRERKKINQWYYHADSNEHKIKLLA
HHHHEEEEEECCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHEEECCCCCHHHHHHH
RFIETEEVTRGIVFIRRREDARELSETLRKRGIRSAYLEGKMAQTQRNNAIDKLKSGIVT
HHHHHHHHHHHHHEEECCHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHCCCEE
VLVATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLL
EEEEHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHH
GKIKRYTEEILKVRILAGLEPRTKPPKDGEVKSVSKKQKARIKEKREEKKKTEAKKKVKL
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RHKDTKNIGKRRKSSNSNI
HCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNLSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEARDVLGSAPTGTGKTAAFLL
CCCCHHHHCCCCHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHH
PALQHLLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHG
HHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCEEEEEECCEEECCCC
DVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRW
CCCCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHH
RKQTLLFSATLEGELLVDFADRLLNDPVRVDAEPSRRERKKINQWYYHADSNEHKIKLLA
HHHHEEEEEECCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHEEECCCCCHHHHHHH
RFIETEEVTRGIVFIRRREDARELSETLRKRGIRSAYLEGKMAQTQRNNAIDKLKSGIVT
HHHHHHHHHHHHHEEECCHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHCCCEE
VLVATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLL
EEEEHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHH
GKIKRYTEEILKVRILAGLEPRTKPPKDGEVKSVSKKQKARIKEKREEKKKTEAKKKVKL
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RHKDTKNIGKRRKSSNSNI
HCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]