Click here to switch to the map view.

The map label for this gene is napF [H]

Identifier: 148827488

GI number: 148827488

Start: 847650

End: 848093

Strand: Direct

Name: napF [H]

Synonym: CGSHiGG_04515

Alternate gene names: 148827488

Gene position: 847650-848093 (Clockwise)

Preceding gene: 148827487

Following gene: 148827489

Centisome position: 44.92

GC content: 39.64

Gene sequence:

>444_bases
ATGACCGTTGAAAATTTACCTCGCAGACAATTTTTACGCGGTAAATTTTCAACATTGAGCTGTTTAGAAAATAATCAAAA
ACAGAATTTTGTGGGTATTAGACCGCCTTGGTCCGTGGAAAATTCTATTTTTGTAGTGCAATGTACGCGCTGTGGCGACT
GTCTTTCTGTCTGTGAAACCAATATTTTGGTAAAGGGCGATGCTGGTTTTCCTGAAGTGTGCTTTGATAATGGCGAATGT
ACTTTTTGTGGGAAATGTGTAGATGCCTGTAAACAGCCTATTTTTTATCCGCGTGACCAGTTACCTTGGTCACATAAAAT
CGACATTGGCGTAGCTTGTTTAACATTGCACCGTATTGAATGTCGAACTTGCCAAGATAATTGCCCAGCTAATGCGATTC
GTTTCAAATTACAAATGGGTGGCGTAGCACAACCTTTTAGTTAA

Upstream 100 bases:

>100_bases
AATAATTGACAAACTACCTATTTTTGGTTGTTTTCATTTATTCATCGTAAACACATAATCCTTCGTCTACAGAAGCATTC
AGAAATATTTGAAAGACATT

Downstream 100 bases:

>100_bases
TTTCGATGCTTGTAATGGCTGTGGGGCTTGTGTACAAGGCTGCCCTGTGAATGCAATAACAATGAACGATCTAAAACAAA
ATGAATAATACAAATTTAAT

Product: ferredoxin-type protein NapF

Products: reduced acceptor; NO3- [C]

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 146

Protein sequence:

>147_residues
MTVENLPRRQFLRGKFSTLSCLENNQKQNFVGIRPPWSVENSIFVVQCTRCGDCLSVCETNILVKGDAGFPEVCFDNGEC
TFCGKCVDACKQPIFYPRDQLPWSHKIDIGVACLTLHRIECRTCQDNCPANAIRFKLQMGGVAQPFS

Sequences:

>Translated_147_residues
MTVENLPRRQFLRGKFSTLSCLENNQKQNFVGIRPPWSVENSIFVVQCTRCGDCLSVCETNILVKGDAGFPEVCFDNGEC
TFCGKCVDACKQPIFYPRDQLPWSHKIDIGVACLTLHRIECRTCQDNCPANAIRFKLQMGGVAQPFS
>Mature_146_residues
TVENLPRRQFLRGKFSTLSCLENNQKQNFVGIRPPWSVENSIFVVQCTRCGDCLSVCETNILVKGDAGFPEVCFDNGECT
FCGKCVDACKQPIFYPRDQLPWSHKIDIGVACLTLHRIECRTCQDNCPANAIRFKLQMGGVAQPFS

Specific function: Involved in electron transfer [H]

COG id: COG1145

COG function: function code C; Ferredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1788536, Length=138, Percent_Identity=42.7536231884058, Blast_Score=120, Evalue=3e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR004496 [H]

Pfam domain/function: PF00037 Fer4 [H]

EC number: NA

Molecular weight: Translated: 16514; Mature: 16383

Theoretical pI: Translated: 7.72; Mature: 7.72

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

9.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
10.9 %Cys+Met (Translated Protein)
9.6 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
10.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVENLPRRQFLRGKFSTLSCLENNQKQNFVGIRPPWSVENSIFVVQCTRCGDCLSVCET
CCCCCCCHHHHHHCCCHHHHHHHCCCCCCEEECCCCCCCCCCEEEEEECCCCHHHHHHCC
NILVKGDAGFPEVCFDNGECTFCGKCVDACKQPIFYPRDQLPWSHKIDIGVACLTLHRIE
CEEEECCCCCCCEEECCCCEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEHHE
CRTCQDNCPANAIRFKLQMGGVAQPFS
EECCCCCCCCCEEEEEEEECCCCCCCC
>Mature Secondary Structure 
TVENLPRRQFLRGKFSTLSCLENNQKQNFVGIRPPWSVENSIFVVQCTRCGDCLSVCET
CCCCCCHHHHHHCCCHHHHHHHCCCCCCEEECCCCCCCCCCEEEEEECCCCHHHHHHCC
NILVKGDAGFPEVCFDNGECTFCGKCVDACKQPIFYPRDQLPWSHKIDIGVACLTLHRIE
CEEEECCCCCCCEEECCCCEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEHHE
CRTCQDNCPANAIRFKLQMGGVAQPFS
EECCCCCCCCCEEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Acceptor; nitrite [C]

Specific reaction: Acceptor + nitrite = reduced acceptor + NO3- [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]