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The map label for this gene is sotB [H]

Identifier: 148827276

GI number: 148827276

Start: 605778

End: 606968

Strand: Direct

Name: sotB [H]

Synonym: CGSHiGG_03255

Alternate gene names: 148827276

Gene position: 605778-606968 (Clockwise)

Preceding gene: 148827275

Following gene: 148827279

Centisome position: 32.1

GC content: 39.13

Gene sequence:

>1191_bases
ATGCCGTTATATTTAAAAGCTGAAAAAATCCAATCATGGCGCGTGCTTATTATGGCTTGCGCAGGATTTATTTTTAATAC
TACAGAATTTGTACCCGTTGCAATGTTAAGCGATATTGCACAAAGTTTTGATATGCAAACCGCTGATACTGGTTTAATGA
TGACAGTTTATGCGTGGACAGTGCTAATTATGTCTTTACCAGCCATGCTTGCCACTGGCAATATGGAACGTAAAAGTCTG
CTTATTAAGCTTTTCATTATATTTATCGTTGGGCATATTTTATCGGTCATTGCATGGAATTTCTGGATATTACTTCTCGC
TCGAATGTGTATTGCATTAGCACATTCGGTGTTTTGGTCAATTACTGCCTCACTTGTGATGCGCATCTCACCTAAACACA
AGAAAACTCAAGCATTAGGAATGCTCGCTATTGGCACCGCACTTGCCACCATCTTAGGCTTACCGATTGGGAGAATTGTC
GGACAGCTTGTCGGTTGGCGGGTCACTTTTGGCATTATTGCGGTACTGGCATTATCCATCATGTTTTTAATTATTCGATT
ATTGCCAAATTTACCCAGTAAAAATGCTGGCTCTATTGCAAGTTTACCCTTGCTTGCTAAACGTCCATTATTACTTTGGC
TTTACGTAACAACGGCAATCGTCATTTCAGCACACTTTACCGCTTATACCTATATCGAACCATTTATGATTGATGTAGGG
CACTTGGATCCAAATTTTGCCACGGCTGTATTATTAGTTTTTGGTTTCTCAGGCATTGCAGCAAGCCTATTATTTAACAG
ATTATACCGATTTGCTCCCACAAAATTTATTGTTGTTTCGATGAGTTTATTGATGTTCTCCCTCTTGCTACTTCTCTTTT
CGACCGAAACAATAATAGCAATGTTCAGCCTTGTGTTTATTTGGGGGATTGGCATTTCTTGTATCGGACTATCTCTACAA
ATGCGCGTACTAAAACTTGCGCCAGATGCAACCGATGTTGCCACAGCTATTTACTCGGGAATTTTCAATGCAGGAATTGG
CGCAGGCGCATTATTTGGAAACCTTGCGACAACCTATTTAGGATTAAATGAAATTGGTTATACAGGCGCAGCATTAGGTT
TAATCGGTTTCATCATTTTTATTACAACGCACTTAAAATATCGCCATACCTTTCTTCTACAAAACAAATAA

Upstream 100 bases:

>100_bases
TCAATTTTTTTGGTAACTGCAATTCTCCACAATACAAAATTAATTTTACGAAGAAATTCCGCCATCAATTAATTGATGCG
ATTAAAGAAAAGTTACGTTA

Downstream 100 bases:

>100_bases
AAAAATAACCGCACTTTAGTTCTCCAAAAGAGTTTTAAAAGTGCGGTTAAATCTGTCTAAGTTTTATTTATCTTGCGTTT
AACGTTTTGCTTTCTTAATA

Product: sugar efflux transporter

Products: arabinose [Periplasm]; Proton [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MPLYLKAEKIQSWRVLIMACAGFIFNTTEFVPVAMLSDIAQSFDMQTADTGLMMTVYAWTVLIMSLPAMLATGNMERKSL
LIKLFIIFIVGHILSVIAWNFWILLLARMCIALAHSVFWSITASLVMRISPKHKKTQALGMLAIGTALATILGLPIGRIV
GQLVGWRVTFGIIAVLALSIMFLIIRLLPNLPSKNAGSIASLPLLAKRPLLLWLYVTTAIVISAHFTAYTYIEPFMIDVG
HLDPNFATAVLLVFGFSGIAASLLFNRLYRFAPTKFIVVSMSLLMFSLLLLLFSTETIIAMFSLVFIWGIGISCIGLSLQ
MRVLKLAPDATDVATAIYSGIFNAGIGAGALFGNLATTYLGLNEIGYTGAALGLIGFIIFITTHLKYRHTFLLQNK

Sequences:

>Translated_396_residues
MPLYLKAEKIQSWRVLIMACAGFIFNTTEFVPVAMLSDIAQSFDMQTADTGLMMTVYAWTVLIMSLPAMLATGNMERKSL
LIKLFIIFIVGHILSVIAWNFWILLLARMCIALAHSVFWSITASLVMRISPKHKKTQALGMLAIGTALATILGLPIGRIV
GQLVGWRVTFGIIAVLALSIMFLIIRLLPNLPSKNAGSIASLPLLAKRPLLLWLYVTTAIVISAHFTAYTYIEPFMIDVG
HLDPNFATAVLLVFGFSGIAASLLFNRLYRFAPTKFIVVSMSLLMFSLLLLLFSTETIIAMFSLVFIWGIGISCIGLSLQ
MRVLKLAPDATDVATAIYSGIFNAGIGAGALFGNLATTYLGLNEIGYTGAALGLIGFIIFITTHLKYRHTFLLQNK
>Mature_395_residues
PLYLKAEKIQSWRVLIMACAGFIFNTTEFVPVAMLSDIAQSFDMQTADTGLMMTVYAWTVLIMSLPAMLATGNMERKSLL
IKLFIIFIVGHILSVIAWNFWILLLARMCIALAHSVFWSITASLVMRISPKHKKTQALGMLAIGTALATILGLPIGRIVG
QLVGWRVTFGIIAVLALSIMFLIIRLLPNLPSKNAGSIASLPLLAKRPLLLWLYVTTAIVISAHFTAYTYIEPFMIDVGH
LDPNFATAVLLVFGFSGIAASLLFNRLYRFAPTKFIVVSMSLLMFSLLLLLFSTETIIAMFSLVFIWGIGISCIGLSLQM
RVLKLAPDATDVATAIYSGIFNAGIGAGALFGNLATTYLGLNEIGYTGAALGLIGFIIFITTHLKYRHTFLLQNK

Specific function: Involved in the efflux of sugars. The physiological role may be the reduction of the intracellular concentration of toxic sugars or sugar metabolites [H]

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. SotB (TC 2.A.1.2) family [H]

Homologues:

Organism=Escherichia coli, GI1787808, Length=364, Percent_Identity=51.6483516483517, Blast_Score=337, Evalue=1e-93,
Organism=Escherichia coli, GI1787947, Length=338, Percent_Identity=29.8816568047337, Blast_Score=136, Evalue=3e-33,
Organism=Escherichia coli, GI145693198, Length=337, Percent_Identity=26.4094955489614, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1786595, Length=349, Percent_Identity=22.3495702005731, Blast_Score=92, Evalue=5e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 43372; Mature: 43241

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLYLKAEKIQSWRVLIMACAGFIFNTTEFVPVAMLSDIAQSFDMQTADTGLMMTVYAWT
CCCEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
VLIMSLPAMLATGNMERKSLLIKLFIIFIVGHILSVIAWNFWILLLARMCIALAHSVFWS
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ITASLVMRISPKHKKTQALGMLAIGTALATILGLPIGRIVGQLVGWRVTFGIIAVLALSI
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
MFLIIRLLPNLPSKNAGSIASLPLLAKRPLLLWLYVTTAIVISAHFTAYTYIEPFMIDVG
HHHHHHHHCCCCCCCCCCCHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEC
HLDPNFATAVLLVFGFSGIAASLLFNRLYRFAPTKFIVVSMSLLMFSLLLLLFSTETIIA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
MFSLVFIWGIGISCIGLSLQMRVLKLAPDATDVATAIYSGIFNAGIGAGALFGNLATTYL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
GLNEIGYTGAALGLIGFIIFITTHLKYRHTFLLQNK
CHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCC
>Mature Secondary Structure 
PLYLKAEKIQSWRVLIMACAGFIFNTTEFVPVAMLSDIAQSFDMQTADTGLMMTVYAWT
CCEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
VLIMSLPAMLATGNMERKSLLIKLFIIFIVGHILSVIAWNFWILLLARMCIALAHSVFWS
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ITASLVMRISPKHKKTQALGMLAIGTALATILGLPIGRIVGQLVGWRVTFGIIAVLALSI
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
MFLIIRLLPNLPSKNAGSIASLPLLAKRPLLLWLYVTTAIVISAHFTAYTYIEPFMIDVG
HHHHHHHHCCCCCCCCCCCHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEC
HLDPNFATAVLLVFGFSGIAASLLFNRLYRFAPTKFIVVSMSLLMFSLLLLLFSTETIIA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
MFSLVFIWGIGISCIGLSLQMRVLKLAPDATDVATAIYSGIFNAGIGAGALFGNLATTYL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
GLNEIGYTGAALGLIGFIIFITTHLKYRHTFLLQNK
CHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: arabinose [Cytoplasm]; Proton [Periplasm] [C]

Specific reaction: arabinose [Cytoplasm] + Proton [Periplasm] = arabinose [Periplasm] + Proton [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA