Click here to switch to the map view.

The map label for this gene is yfjD [C]

Identifier: 148827250

GI number: 148827250

Start: 570182

End: 571444

Strand: Direct

Name: yfjD [C]

Synonym: CGSHiGG_03100

Alternate gene names: 148827250

Gene position: 570182-571444 (Clockwise)

Preceding gene: 148827248

Following gene: 148827252

Centisome position: 30.21

GC content: 38.0

Gene sequence:

>1263_bases
TTGGATAGCATTCCCCTTAGTACTTTATTTATTATTCTTATTATCTGTTTAGTGTTATCAGCCTATTTTTCTGGTTCTGA
AACTGGACTACTCTCCCTCAATAAATATCGTCTTCGTTTTCTATCTGAACAAGGCAATAAAGGTGCGAAAAAAGCGGAAA
AACTGCTAGAAAAGCCAGATACTTTGTTAAGTTTTATTCTTATTTTTAATAACCTTGTGAATATCAGCGCATCTGCAATT
GCAACAGTAATTGGTATGCGTTTATATGGCGATGCCGGCGTGGCGATTGCAACGGGTTTGCTCACTTTCGTAATGCTCGT
ATTTTCTGAAATATTCCCCAAAACTGTGGCTGCAATGCACGCAGAAAAAGTAAGTTTTTTTTCAAGTCATATTTTAACTT
CATTGCTTAAAATCTTTTATCCGCTCGTTTGGTTAATGAATATTTTTACTAAATCCTTGATGCAAATAGTAGGGTTAAAA
CTTGATATGCAAAAACAAGTAATTAGTAGTGAAGAACTGCGTAGTATTGTATCAGAAGCGGGCGAAGCAACTCCAAATGA
ACAACATCCACAAATGTTGCTGTCTATTTTGGATATGGAAACCGTCACTGTTGATGACATTATGGTTCCCCGCAACGAAA
TCGGCGGTATAAATATTGATGATGATTGGCGAGCTATTATGCGCCAGCTCAATCATGCCGCACACAATCGTGTTGTACTT
TATAAAAGTAGCCTTGATGAACAAGTGCTTGGCATTTTGCGCGTGCGTGAAGCATTCCGCTTGCTCCTTGAAAAAAATGA
ATTTACCAAAGAAACCTTAATTCGTGCCGCAGATGAAGTGTATTTCATTCCTGAAAGCACGCCATTAAAAACGCAACTTG
CAAATTTCCGTACAAATAAAGAGCGCATTGGCTTAGTTGTAGATGAATACGGCGATATTAAAGGGCTTGTAACTTTGGAG
GATATTTTGGAGGAAATCGTTGGGGATTTTACCACTTCCACCGCCCCAAGCATTGACAAAGAAGTAATTCAACAGTCTGA
TGGTTCAATGATTATCGATGGCTCCGCTAATCTACGCGATCTCAACAAAATGTTTAACTGGGAATTAGATACAGAAGATG
CTCGTACTTTTAATGGTTTAATCTTAGAACACTTAGAGGAAATACCCGATGAAGGCACGATTTGCGAAATTGATGGTTTG
CTAATCACTATTCTTGAAGTGGGCGATAATATGATAAAACAGGCGAAAGTCGTCAAACTTTAA

Upstream 100 bases:

>100_bases
TTTGAGCAGCTATTTGATTTAGCAAAATCAAATAACAGGTAAAAAGTGCGGTGAAAAATGACCGCACTTTTTGTTGATTA
ACGAACAAAAGGATTTTCCC

Downstream 100 bases:

>100_bases
TCATAAAAAACTCCACCAAATTGAACCGCACTTTTGACTTGGATCATAAGTGCGGTTCTTTTTTTGCGCATTTTTTAGAA
AAGATTTTTATAATTCTTTC

Product: putative Mg2+ and Co2+ transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MDSIPLSTLFIILIICLVLSAYFSGSETGLLSLNKYRLRFLSEQGNKGAKKAEKLLEKPDTLLSFILIFNNLVNISASAI
ATVIGMRLYGDAGVAIATGLLTFVMLVFSEIFPKTVAAMHAEKVSFFSSHILTSLLKIFYPLVWLMNIFTKSLMQIVGLK
LDMQKQVISSEELRSIVSEAGEATPNEQHPQMLLSILDMETVTVDDIMVPRNEIGGINIDDDWRAIMRQLNHAAHNRVVL
YKSSLDEQVLGILRVREAFRLLLEKNEFTKETLIRAADEVYFIPESTPLKTQLANFRTNKERIGLVVDEYGDIKGLVTLE
DILEEIVGDFTTSTAPSIDKEVIQQSDGSMIIDGSANLRDLNKMFNWELDTEDARTFNGLILEHLEEIPDEGTICEIDGL
LITILEVGDNMIKQAKVVKL

Sequences:

>Translated_420_residues
MDSIPLSTLFIILIICLVLSAYFSGSETGLLSLNKYRLRFLSEQGNKGAKKAEKLLEKPDTLLSFILIFNNLVNISASAI
ATVIGMRLYGDAGVAIATGLLTFVMLVFSEIFPKTVAAMHAEKVSFFSSHILTSLLKIFYPLVWLMNIFTKSLMQIVGLK
LDMQKQVISSEELRSIVSEAGEATPNEQHPQMLLSILDMETVTVDDIMVPRNEIGGINIDDDWRAIMRQLNHAAHNRVVL
YKSSLDEQVLGILRVREAFRLLLEKNEFTKETLIRAADEVYFIPESTPLKTQLANFRTNKERIGLVVDEYGDIKGLVTLE
DILEEIVGDFTTSTAPSIDKEVIQQSDGSMIIDGSANLRDLNKMFNWELDTEDARTFNGLILEHLEEIPDEGTICEIDGL
LITILEVGDNMIKQAKVVKL
>Mature_420_residues
MDSIPLSTLFIILIICLVLSAYFSGSETGLLSLNKYRLRFLSEQGNKGAKKAEKLLEKPDTLLSFILIFNNLVNISASAI
ATVIGMRLYGDAGVAIATGLLTFVMLVFSEIFPKTVAAMHAEKVSFFSSHILTSLLKIFYPLVWLMNIFTKSLMQIVGLK
LDMQKQVISSEELRSIVSEAGEATPNEQHPQMLLSILDMETVTVDDIMVPRNEIGGINIDDDWRAIMRQLNHAAHNRVVL
YKSSLDEQVLGILRVREAFRLLLEKNEFTKETLIRAADEVYFIPESTPLKTQLANFRTNKERIGLVVDEYGDIKGLVTLE
DILEEIVGDFTTSTAPSIDKEVIQQSDGSMIIDGSANLRDLNKMFNWELDTEDARTFNGLILEHLEEIPDEGTICEIDGL
LITILEVGDNMIKQAKVVKL

Specific function: Unknown

COG id: COG4536

COG function: function code P; Putative Mg2+ and Co2+ transporter CorB

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=396, Percent_Identity=25.7575757575758, Blast_Score=130, Evalue=3e-30,
Organism=Homo sapiens, GI94681046, Length=331, Percent_Identity=25.3776435045317, Blast_Score=73, Evalue=6e-13,
Organism=Homo sapiens, GI40068055, Length=344, Percent_Identity=24.1279069767442, Blast_Score=66, Evalue=5e-11,
Organism=Homo sapiens, GI40068053, Length=344, Percent_Identity=24.1279069767442, Blast_Score=66, Evalue=5e-11,
Organism=Escherichia coli, GI145693175, Length=398, Percent_Identity=61.0552763819096, Blast_Score=505, Evalue=1e-144,
Organism=Escherichia coli, GI1790664, Length=437, Percent_Identity=20.5949656750572, Blast_Score=118, Evalue=8e-28,
Organism=Escherichia coli, GI87082033, Length=274, Percent_Identity=27.007299270073, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI1786879, Length=249, Percent_Identity=26.1044176706827, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1788119, Length=242, Percent_Identity=28.5123966942149, Blast_Score=81, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6324512, Length=352, Percent_Identity=22.1590909090909, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 46990; Mature: 46990

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSIPLSTLFIILIICLVLSAYFSGSETGLLSLNKYRLRFLSEQGNKGAKKAEKLLEKPD
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHCCCCCHHHHHHHHHCHH
TLLSFILIFNNLVNISASAIATVIGMRLYGDAGVAIATGLLTFVMLVFSEIFPKTVAAMH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEKVSFFSSHILTSLLKIFYPLVWLMNIFTKSLMQIVGLKLDMQKQVISSEELRSIVSEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHH
GEATPNEQHPQMLLSILDMETVTVDDIMVPRNEIGGINIDDDWRAIMRQLNHAAHNRVVL
CCCCCCCCHHHHHHHHHHHHHEEHHHEECCCHHCCCCCCCHHHHHHHHHHHHHHHCEEEE
YKSSLDEQVLGILRVREAFRLLLEKNEFTKETLIRAADEVYFIPESTPLKTQLANFRTNK
ECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEECCCCCCHHHHHHHHCCCH
ERIGLVVDEYGDIKGLVTLEDILEEIVGDFTTSTAPSIDKEVIQQSDGSMIIDGSANLRD
HHHCEEEECCCCCCCEEEHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCEEEECCCCHHH
LNKMFNWELDTEDARTFNGLILEHLEEIPDEGTICEIDGLLITILEVGDNMIKQAKVVKL
HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHCHHHHHHHHHCCC
>Mature Secondary Structure
MDSIPLSTLFIILIICLVLSAYFSGSETGLLSLNKYRLRFLSEQGNKGAKKAEKLLEKPD
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHCCCCCHHHHHHHHHCHH
TLLSFILIFNNLVNISASAIATVIGMRLYGDAGVAIATGLLTFVMLVFSEIFPKTVAAMH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEKVSFFSSHILTSLLKIFYPLVWLMNIFTKSLMQIVGLKLDMQKQVISSEELRSIVSEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHH
GEATPNEQHPQMLLSILDMETVTVDDIMVPRNEIGGINIDDDWRAIMRQLNHAAHNRVVL
CCCCCCCCHHHHHHHHHHHHHEEHHHEECCCHHCCCCCCCHHHHHHHHHHHHHHHCEEEE
YKSSLDEQVLGILRVREAFRLLLEKNEFTKETLIRAADEVYFIPESTPLKTQLANFRTNK
ECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEECCCCCCHHHHHHHHCCCH
ERIGLVVDEYGDIKGLVTLEDILEEIVGDFTTSTAPSIDKEVIQQSDGSMIIDGSANLRD
HHHCEEEECCCCCCCEEEHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCEEEECCCCHHH
LNKMFNWELDTEDARTFNGLILEHLEEIPDEGTICEIDGLLITILEVGDNMIKQAKVVKL
HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]