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The map label for this gene is yggS [C]

Identifier: 148827239

GI number: 148827239

Start: 550060

End: 550761

Strand: Direct

Name: yggS [C]

Synonym: CGSHiGG_03010

Alternate gene names: 148827239

Gene position: 550060-550761 (Clockwise)

Preceding gene: 148827233

Following gene: 148827241

Centisome position: 29.15

GC content: 38.32

Gene sequence:

>702_bases
ATGAATATCCAGCATAATCTCAACCTAATTCAGCAAAAAATTGAAACGGCTTGTAAAGAAGAAAATCGCAATCAAAATAC
CGTAAAATTACTTGCCGTATCTAAGACCAAACCTATTTCCGCTATTCTTTCGGCTTATCAAGCGGGACAAACGGCTTTTG
GGGAAAATTACGTGCAAGAGGGGGTAGAAAAGATCCAATATTTTGAGTCTCAAAATATAAACCTTGAATGGCATTTTATC
GGCCCATTACAATCGAATAAAACCCGTCTCGTTGCAGAACATTTTGATTGGATGCAAACGCTTGATCGAGCAAAAATTGC
AGATCGTTTAAATGAACAACGACCGACCAACAAGGCTCCATTGAATGTATTAATTCAGATTAATATCAGCGATGAAGAAA
GTAAATCAGGTATTCAACCTGAGGAAATGCTAACACTAGCAAAACACATCGAAAATTTACCGCACTTATGCCTACGTGGC
TTAATGGCAATACCCGCACCAACCGATAAAATCCCTGAACAAGAAGCCGTGTTCAGAAAAATGTCAGACCTATTTGAACA
ACTTAAACAAGTCTTACCCAATCAACAAATTGATACACTTTCTATGGGAATGACGGATGATATGCCGAGCGCAATAAAAT
GCGGTTCTACAATGGTACGCATTGGCACTGCGATTTTTGGTACAAGGGATTATTCAAAATAA

Upstream 100 bases:

>100_bases
TTCCCTAGCTTGTCAAACAGAAAGTGACAAATTTTTCAGAAATTTTCTTAGTCAATAAATTTCGTGTAAACTAACCGCAC
TTTTTTATAAAGGAAAACCT

Downstream 100 bases:

>100_bases
TTCTAAAAAACTATTGAAAAAATTATCGTAAGAAAAAGCGAACCGCACATAAAAGTGCGGTTCATTTTTATATTATTTTT
GGCTACATACAGCAATAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MNIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQEGVEKIQYFESQNINLEWHFI
GPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQRPTNKAPLNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRG
LMAIPAPTDKIPEQEAVFRKMSDLFEQLKQVLPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGTRDYSK

Sequences:

>Translated_233_residues
MNIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQEGVEKIQYFESQNINLEWHFI
GPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQRPTNKAPLNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRG
LMAIPAPTDKIPEQEAVFRKMSDLFEQLKQVLPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGTRDYSK
>Mature_233_residues
MNIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQEGVEKIQYFESQNINLEWHFI
GPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQRPTNKAPLNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRG
LMAIPAPTDKIPEQEAVFRKMSDLFEQLKQVLPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGTRDYSK

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=246, Percent_Identity=38.2113821138211, Blast_Score=140, Evalue=1e-33,
Organism=Escherichia coli, GI1789321, Length=233, Percent_Identity=61.3733905579399, Blast_Score=280, Evalue=4e-77,
Organism=Caenorhabditis elegans, GI17533025, Length=215, Percent_Identity=35.8139534883721, Blast_Score=122, Evalue=1e-28,
Organism=Saccharomyces cerevisiae, GI6319435, Length=219, Percent_Identity=37.4429223744292, Blast_Score=110, Evalue=2e-25,
Organism=Drosophila melanogaster, GI45550861, Length=217, Percent_Identity=40.0921658986175, Blast_Score=136, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 26410; Mature: 26410

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQE
CCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHH
GVEKIQYFESQNINLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQRPTNKAP
HHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
LNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRGLMAIPAPTDKIPEQEAVFRK
EEEEEEEEECCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
MSDLFEQLKQVLPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGTRDYSK
HHHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQE
CCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHH
GVEKIQYFESQNINLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQRPTNKAP
HHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
LNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRGLMAIPAPTDKIPEQEAVFRK
EEEEEEEEECCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
MSDLFEQLKQVLPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGTRDYSK
HHHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]