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The map label for this gene is ybaQ [C]

Identifier: 148827042

GI number: 148827042

Start: 300593

End: 300916

Strand: Reverse

Name: ybaQ [C]

Synonym: CGSHiGG_01745

Alternate gene names: 148827042

Gene position: 300916-300593 (Counterclockwise)

Preceding gene: 148827043

Following gene: 148827041

Centisome position: 15.95

GC content: 35.19

Gene sequence:

>324_bases
ATGATGACGAGAAAACCCACCTCTGTTGGCGAAATTCTACAAGAAGAGTTTTTAGAACCTTTAAGTCTTAAAATTAATGA
TTTAGCTCAAATTTTAGATGTACATCGTAATACGGCAAGTAATATTGTTAATAATAGTTCACGAATTACGCTAGAAATGG
CAGTTAAACTTGCTAAAGCATTTGATACTACGCCTGAGTTTTGGCTTAATCTGCAAACACGTATTGATTTATGGGAGCTT
GAACACAATAAACGTTTTCAACAAAGTCTTGCAAATGTTAAGCCCGCTCTGCATCGGCATGGTACTTCTACATTTGCAAT
GTAA

Upstream 100 bases:

>100_bases
CGAGTAAATAAACAATATCGCCTAATTTTTAAATATGAGAATAACGAAGTAAATAATTTATATTTAGATCCACATTCTTA
TAATTTATAAGGAAGATAAT

Downstream 100 bases:

>100_bases
TTTAAGTCCTAAAGTGTCTATTTCATTTAGGGAGCTGCTTTACCCCTAAATATTTACAAGCGGTCAGTTTCCGTGAAACT
TTTGTAAAATCCTACCGCTT

Product: plasmid maintenance system antidote protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 107; Mature: 107

Protein sequence:

>107_residues
MMTRKPTSVGEILQEEFLEPLSLKINDLAQILDVHRNTASNIVNNSSRITLEMAVKLAKAFDTTPEFWLNLQTRIDLWEL
EHNKRFQQSLANVKPALHRHGTSTFAM

Sequences:

>Translated_107_residues
MMTRKPTSVGEILQEEFLEPLSLKINDLAQILDVHRNTASNIVNNSSRITLEMAVKLAKAFDTTPEFWLNLQTRIDLWEL
EHNKRFQQSLANVKPALHRHGTSTFAM
>Mature_107_residues
MMTRKPTSVGEILQEEFLEPLSLKINDLAQILDVHRNTASNIVNNSSRITLEMAVKLAKAFDTTPEFWLNLQTRIDLWEL
EHNKRFQQSLANVKPALHRHGTSTFAM

Specific function: Unknown

COG id: COG3093

COG function: function code R; Plasmid maintenance system antidote protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081745, Length=92, Percent_Identity=57.6086956521739, Blast_Score=117, Evalue=1e-28,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013430
- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 12302; Mature: 12302

Theoretical pI: Translated: 7.87; Mature: 7.87

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTRKPTSVGEILQEEFLEPLSLKINDLAQILDVHRNTASNIVNNSSRITLEMAVKLAKA
CCCCCCCHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
FDTTPEFWLNLQTRIDLWELEHNKRFQQSLANVKPALHRHGTSTFAM
HCCCHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MMTRKPTSVGEILQEEFLEPLSLKINDLAQILDVHRNTASNIVNNSSRITLEMAVKLAKA
CCCCCCCHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
FDTTPEFWLNLQTRIDLWELEHNKRFQQSLANVKPALHRHGTSTFAM
HCCCHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]