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The map label for this gene is recD [H]

Identifier: 148826976

GI number: 148826976

Start: 215305

End: 217227

Strand: Reverse

Name: recD [H]

Synonym: CGSHiGG_01280

Alternate gene names: 148826976

Gene position: 217227-215305 (Counterclockwise)

Preceding gene: 148826977

Following gene: 148826974

Centisome position: 11.51

GC content: 38.64

Gene sequence:

>1923_bases
ATGTTATCTGTATTACACAAACTTAAAGAGCAGCGCATTCTTTCTCAAGGTGATTATTATTTTGCTAAGTTGATAGCTGA
TAAACAATGTCATATGGATTATGCGGAACCAATCAAAAATTTAGCCATATTATTAGCCGCACTTTGTAGTTGGCGTTATA
CGCAGGGAAATACTTGCAGCCAATTAGATCGCTATTTAGAACATAATTTATTTGGTTTGGCTTATCGTACAACAGAAGAA
GATTATTTAGCTGAAATTCATGAAAAGATTGGTTATTTACCCGTTGAAGATTGGCAAAATGCGTTGCACGGGCATATGGC
ATTTACGCAAGATCCCGTCAATCAAATTGCACCAATGGCATTTCAATTTGGCGCGTTGTATTTCTATCGCACTTGGCAAG
ATGAATATCGTATCGCACAATATATAAAAAACACTTTAAAAAAACACCGCACTTTAGCCTTTTCTTATGATGAAATTCAT
CAAAAATTAGAGAAATTTTTCCCTGAAAAACAGGAAAAAACAGATTGGCAAAAAGTGGCAGTGGCGACAGCGATTAAAAG
TCCATTTTCGATTATTACAGGCGGCCCTGGAACAGGAAAAACCACGACAGTTACGCGTTTATTGCTCGCTCTACAAGAAT
TATTTGATTGTAAATTACACATCAAATTGGTTGCGCCGACTGGCAAAGCCGCCTCTCGTTTGGAAGAGTCGATTAAAAAT
GCGTTAGGTTTTATGCAAGAAAAAATGAATTTATCCGATTCACTTTTCAATGCGATTCCACAAAAAGCCAGCACTTTGCA
TAGTTTACTGGGTGTGAATGCCTTTAATGATTACACGCGCTATAACAGCCATAACCCTTTGCAATTAGATGTGTTAGTTG
TTGATGAAACATCAATGATTGATTTACCGATGATGGCAAAACTTATCAATGCGTTAAAGCCCGAAACCCGATTAATTTTA
TTAGGCGATCAGGCGCAATTAGCCTCTGTTGAGGCGGGGGCTGTATTGGGGGAATTGGCTCAATTTGTTAATCAACCTTA
TAGTCATGAACAAGCCTCATATTTGCAAGCGACAACAGGCTACAAAGTAGAAGGTTCCGATTGTTCAAATCCAATACGTG
ATTGCTTATGCCATCTAACAGAAAGTCGCCGTTTTGATAAAGATTCAGGCATTGGCAAGTTGTCCGAATTCATTCAAAAA
GGCAAAGCAGACGATAGCCTTAAGTTATTTGAACATTATCCGCAAGAATTGCACTTTAATGCCCTAAATGATGAAAGCGA
TGCGGTCAATCAAGTGGTGAAAAGTGCGGTGGAAAATTACCGCACTTTCTTAAAAATGTTGGACGATTTACGTAAACAAA
AAATTGATCCTAACGCTAAAAATGAACAAGGCATTTCCTATGCCGAAGCCATTCAAGCGCAATTTAATTCTGTGAGATTT
TTAACCGCACTTCGTAATAACAATTTAGGTGTCGAAAATCTCAATAAAGAAATTGCGTTAGCGTTGCGAGAGCAAAAATT
GCTTTGGTTCCGTAATGAACAAGATTGGTATATCGGCAAGCCAATTATGATTACTGAAAACGATCATAACGTTCGCCTTT
ATAACGGCGATATTGGACTATGCTTGGCAAATGGCAAAGTATGGTTTGGCAATCGAGAAGTGCTGACAAACCGAATTCCA
GCGCACGAACCCGCTTTTATGATGACGATTCATAAATCTCAAGGTTCCGAATTTGAACATACCGTCATGGTGCTTCCAAC
AGAAGTAAATCCAGTACTGTCGCGAGAATTAGTTTTCACGGGCGTCACTCGTGCGAAAAAAGAACTCACTGTATTTGCCG
ATGAAAAAATATGGAAAACAGCGATTCGTCAGACCGTCAAACGCCAGAGCGGATTGGGAAAATTATTGGAAGATTTAAAT
TAG

Upstream 100 bases:

>100_bases
TTTATCTTTTCTTACGTGGAATGAATGGTGAGCCACAATCTGGCGTATTTTATGATCGTCCAAGCGTTGAATTAATCACA
GAATTAGACGGGGTGTTTTA

Downstream 100 bases:

>100_bases
TAAAAGGCGGTAAATTTGGAAGATAAATCAATCAGATAATCTCCATTTAAAATAACTTTTGGGAAGATTATTTTAATAAA
TTCTTCAAACTGGTTTTCAT

Product: exodeoxyribonuclease V subunit alpha

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 640; Mature: 640

Protein sequence:

>640_residues
MLSVLHKLKEQRILSQGDYYFAKLIADKQCHMDYAEPIKNLAILLAALCSWRYTQGNTCSQLDRYLEHNLFGLAYRTTEE
DYLAEIHEKIGYLPVEDWQNALHGHMAFTQDPVNQIAPMAFQFGALYFYRTWQDEYRIAQYIKNTLKKHRTLAFSYDEIH
QKLEKFFPEKQEKTDWQKVAVATAIKSPFSIITGGPGTGKTTTVTRLLLALQELFDCKLHIKLVAPTGKAASRLEESIKN
ALGFMQEKMNLSDSLFNAIPQKASTLHSLLGVNAFNDYTRYNSHNPLQLDVLVVDETSMIDLPMMAKLINALKPETRLIL
LGDQAQLASVEAGAVLGELAQFVNQPYSHEQASYLQATTGYKVEGSDCSNPIRDCLCHLTESRRFDKDSGIGKLSEFIQK
GKADDSLKLFEHYPQELHFNALNDESDAVNQVVKSAVENYRTFLKMLDDLRKQKIDPNAKNEQGISYAEAIQAQFNSVRF
LTALRNNNLGVENLNKEIALALREQKLLWFRNEQDWYIGKPIMITENDHNVRLYNGDIGLCLANGKVWFGNREVLTNRIP
AHEPAFMMTIHKSQGSEFEHTVMVLPTEVNPVLSRELVFTGVTRAKKELTVFADEKIWKTAIRQTVKRQSGLGKLLEDLN

Sequences:

>Translated_640_residues
MLSVLHKLKEQRILSQGDYYFAKLIADKQCHMDYAEPIKNLAILLAALCSWRYTQGNTCSQLDRYLEHNLFGLAYRTTEE
DYLAEIHEKIGYLPVEDWQNALHGHMAFTQDPVNQIAPMAFQFGALYFYRTWQDEYRIAQYIKNTLKKHRTLAFSYDEIH
QKLEKFFPEKQEKTDWQKVAVATAIKSPFSIITGGPGTGKTTTVTRLLLALQELFDCKLHIKLVAPTGKAASRLEESIKN
ALGFMQEKMNLSDSLFNAIPQKASTLHSLLGVNAFNDYTRYNSHNPLQLDVLVVDETSMIDLPMMAKLINALKPETRLIL
LGDQAQLASVEAGAVLGELAQFVNQPYSHEQASYLQATTGYKVEGSDCSNPIRDCLCHLTESRRFDKDSGIGKLSEFIQK
GKADDSLKLFEHYPQELHFNALNDESDAVNQVVKSAVENYRTFLKMLDDLRKQKIDPNAKNEQGISYAEAIQAQFNSVRF
LTALRNNNLGVENLNKEIALALREQKLLWFRNEQDWYIGKPIMITENDHNVRLYNGDIGLCLANGKVWFGNREVLTNRIP
AHEPAFMMTIHKSQGSEFEHTVMVLPTEVNPVLSRELVFTGVTRAKKELTVFADEKIWKTAIRQTVKRQSGLGKLLEDLN
>Mature_640_residues
MLSVLHKLKEQRILSQGDYYFAKLIADKQCHMDYAEPIKNLAILLAALCSWRYTQGNTCSQLDRYLEHNLFGLAYRTTEE
DYLAEIHEKIGYLPVEDWQNALHGHMAFTQDPVNQIAPMAFQFGALYFYRTWQDEYRIAQYIKNTLKKHRTLAFSYDEIH
QKLEKFFPEKQEKTDWQKVAVATAIKSPFSIITGGPGTGKTTTVTRLLLALQELFDCKLHIKLVAPTGKAASRLEESIKN
ALGFMQEKMNLSDSLFNAIPQKASTLHSLLGVNAFNDYTRYNSHNPLQLDVLVVDETSMIDLPMMAKLINALKPETRLIL
LGDQAQLASVEAGAVLGELAQFVNQPYSHEQASYLQATTGYKVEGSDCSNPIRDCLCHLTESRRFDKDSGIGKLSEFIQK
GKADDSLKLFEHYPQELHFNALNDESDAVNQVVKSAVENYRTFLKMLDDLRKQKIDPNAKNEQGISYAEAIQAQFNSVRF
LTALRNNNLGVENLNKEIALALREQKLLWFRNEQDWYIGKPIMITENDHNVRLYNGDIGLCLANGKVWFGNREVLTNRIP
AHEPAFMMTIHKSQGSEFEHTVMVLPTEVNPVLSRELVFTGVTRAKKELTVFADEKIWKTAIRQTVKRQSGLGKLLEDLN

Specific function: Exhibits several catalytic activities, including ATP- dependent exonuclease, ATP-stimulated endonuclease, ATP-dependent unwinding and DNA-dependent ATPase activities. Strand cleavage occurs 5' to 3' during the unwinding of duplex DNA at CHI sequences, whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recD family [H]

Homologues:

Organism=Escherichia coli, GI1789182, Length=607, Percent_Identity=39.5387149917628, Blast_Score=358, Evalue=1e-100,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007807
- InterPro:   IPR006344
- InterPro:   IPR000606 [H]

Pfam domain/function: PF05127 DUF699; PF01443 Viral_helicase1 [H]

EC number: =3.1.11.5 [H]

Molecular weight: Translated: 72926; Mature: 72926

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSVLHKLKEQRILSQGDYYFAKLIADKQCHMDYAEPIKNLAILLAALCSWRYTQGNTCS
CHHHHHHHHHHHHHHCCCHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH
QLDRYLEHNLFGLAYRTTEEDYLAEIHEKIGYLPVEDWQNALHGHMAFTQDPVNQIAPMA
HHHHHHHHCHHEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHH
FQFGALYFYRTWQDEYRIAQYIKNTLKKHRTLAFSYDEIHQKLEKFFPEKQEKTDWQKVA
HHHHHEHEEECCHHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHCCCCCCCCHHHHHH
VATAIKSPFSIITGGPGTGKTTTVTRLLLALQELFDCKLHIKLVAPTGKAASRLEESIKN
HHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHH
ALGFMQEKMNLSDSLFNAIPQKASTLHSLLGVNAFNDYTRYNSHNPLQLDVLVVDETSMI
HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEEEEECCCCCC
DLPMMAKLINALKPETRLILLGDQAQLASVEAGAVLGELAQFVNQPYSHEQASYLQATTG
CHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCC
YKVEGSDCSNPIRDCLCHLTESRRFDKDSGIGKLSEFIQKGKADDSLKLFEHYPQELHFN
CEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHCCHHHCCC
ALNDESDAVNQVVKSAVENYRTFLKMLDDLRKQKIDPNAKNEQGISYAEAIQAQFNSVRF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
LTALRNNNLGVENLNKEIALALREQKLLWFRNEQDWYIGKPIMITENDHNVRLYNGDIGL
HHHHHCCCCCHHHCCHHHHHHHHHHHEEEEECCCCEEECCCEEEECCCCEEEEEECCEEE
CLANGKVWFGNREVLTNRIPAHEPAFMMTIHKSQGSEFEHTVMVLPTEVNPVLSRELVFT
EEECCEEEECCHHHHHCCCCCCCCEEEEEEECCCCCCCCEEEEEEECCCCHHHHHHHHHH
GVTRAKKELTVFADEKIWKTAIRQTVKRQSGLGKLLEDLN
HHHHHHHHEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLSVLHKLKEQRILSQGDYYFAKLIADKQCHMDYAEPIKNLAILLAALCSWRYTQGNTCS
CHHHHHHHHHHHHHHCCCHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH
QLDRYLEHNLFGLAYRTTEEDYLAEIHEKIGYLPVEDWQNALHGHMAFTQDPVNQIAPMA
HHHHHHHHCHHEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHH
FQFGALYFYRTWQDEYRIAQYIKNTLKKHRTLAFSYDEIHQKLEKFFPEKQEKTDWQKVA
HHHHHEHEEECCHHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHCCCCCCCCHHHHHH
VATAIKSPFSIITGGPGTGKTTTVTRLLLALQELFDCKLHIKLVAPTGKAASRLEESIKN
HHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHH
ALGFMQEKMNLSDSLFNAIPQKASTLHSLLGVNAFNDYTRYNSHNPLQLDVLVVDETSMI
HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEEEEECCCCCC
DLPMMAKLINALKPETRLILLGDQAQLASVEAGAVLGELAQFVNQPYSHEQASYLQATTG
CHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCC
YKVEGSDCSNPIRDCLCHLTESRRFDKDSGIGKLSEFIQKGKADDSLKLFEHYPQELHFN
CEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHCCHHHCCC
ALNDESDAVNQVVKSAVENYRTFLKMLDDLRKQKIDPNAKNEQGISYAEAIQAQFNSVRF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
LTALRNNNLGVENLNKEIALALREQKLLWFRNEQDWYIGKPIMITENDHNVRLYNGDIGL
HHHHHCCCCCHHHCCHHHHHHHHHHHEEEEECCCCEEECCCEEEECCCCEEEEEECCEEE
CLANGKVWFGNREVLTNRIPAHEPAFMMTIHKSQGSEFEHTVMVLPTEVNPVLSRELVFT
EEECCEEEECCHHHHHCCCCCCCCEEEEEEECCCCCCCCEEEEEEECCCCHHHHHHHHHH
GVTRAKKELTVFADEKIWKTAIRQTVKRQSGLGKLLEDLN
HHHHHHHHEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]