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The map label for this gene is potC [H]

Identifier: 148826819

GI number: 148826819

Start: 60978

End: 61748

Strand: Reverse

Name: potC [H]

Synonym: CGSHiGG_00365

Alternate gene names: 148826819

Gene position: 61748-60978 (Counterclockwise)

Preceding gene: 148826820

Following gene: 148826818

Centisome position: 3.27

GC content: 36.58

Gene sequence:

>771_bases
ATGAGTCGTTTACTACGTAATGCATTTATGTTTGTGGTATACGCTTATTTGTATATCCCAATTATTATTTTAGTCACTAA
TTCCTTTAACAAAGATCGTTATGGTTTGAGTTGGAAAGGTTTTAGCTGGAACTGGTACGAGCGTTTATTTAATAACGACA
CCTTAATACAAGCTGCGATTCATTCGGTAACTATTGCATTTTTTGCGGCTACCCTAGCTACTATTGTAGGTGGATTAACT
GCAATCGCACTTTATCGCTATCGATTCCGCGGTAAACAAGCAGTAAGCGGTATGCTATTTATCGTTATGATGTCTCCAGA
TATTGTAATGGCAGTATCTTTACTTGCATTATTTATGGTTGTGGGTATTTCATTGGGCTTCTGGTCTTTACTACTTGCCC
ACGTAACTTTCTGTTTACCGTATGTGACCGTAACTATCTTCTCTCGCTTAAATGGCTTTGATTCCAGAATGTTAGAAGCG
GCGAAAGACTTAGGTGCAAGCGAAGTGACTATTTTACGTAAAATTATCCTTCCTTTAGCATTACCTGCAGTTGTATCTGG
TTGGTTATTAAGTTTCACTATTTCATTAGATGATGTTGTGGTTTCATCATTTGTCAGTGGTGTAAGTTATGAAATCTTAC
CATTGAGAATATTCTCTCTAGTGAAAACTGGTGTAACACCTGAAGTTAATGCTTTAGCAACGATTATGATCGTGCTTTCA
TTAGCTCTTGTCGTTTTAAGCCAGCTAATTACACGAAAAAATAACCATTAA

Upstream 100 bases:

>100_bases
GTTCTGCAGTCAGTATTGGTTTAACTGTTCTAATGGCATTGTTGATTTTCGTGTACTACCGAGCAAACAAACTATTAAAT
AAGAAAGTGGAGTTAGAATA

Downstream 100 bases:

>100_bases
TTAACAAAAGGTTTCACAAACCTTTGAATTTAAAATAGAATACGCCTTGACGCACAATCAAGGCGTTTTTTTATGCCTGT
CATTCGGCAGGTGGTTTTTT

Product: spermidine/putrescine ABC transporter membrane protein

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 255

Protein sequence:

>256_residues
MSRLLRNAFMFVVYAYLYIPIIILVTNSFNKDRYGLSWKGFSWNWYERLFNNDTLIQAAIHSVTIAFFAATLATIVGGLT
AIALYRYRFRGKQAVSGMLFIVMMSPDIVMAVSLLALFMVVGISLGFWSLLLAHVTFCLPYVTVTIFSRLNGFDSRMLEA
AKDLGASEVTILRKIILPLALPAVVSGWLLSFTISLDDVVVSSFVSGVSYEILPLRIFSLVKTGVTPEVNALATIMIVLS
LALVVLSQLITRKNNH

Sequences:

>Translated_256_residues
MSRLLRNAFMFVVYAYLYIPIIILVTNSFNKDRYGLSWKGFSWNWYERLFNNDTLIQAAIHSVTIAFFAATLATIVGGLT
AIALYRYRFRGKQAVSGMLFIVMMSPDIVMAVSLLALFMVVGISLGFWSLLLAHVTFCLPYVTVTIFSRLNGFDSRMLEA
AKDLGASEVTILRKIILPLALPAVVSGWLLSFTISLDDVVVSSFVSGVSYEILPLRIFSLVKTGVTPEVNALATIMIVLS
LALVVLSQLITRKNNH
>Mature_255_residues
SRLLRNAFMFVVYAYLYIPIIILVTNSFNKDRYGLSWKGFSWNWYERLFNNDTLIQAAIHSVTIAFFAATLATIVGGLTA
IALYRYRFRGKQAVSGMLFIVMMSPDIVMAVSLLALFMVVGISLGFWSLLLAHVTFCLPYVTVTIFSRLNGFDSRMLEAA
KDLGASEVTILRKIILPLALPAVVSGWLLSFTISLDDVVVSSFVSGVSYEILPLRIFSLVKTGVTPEVNALATIMIVLSL
ALVVLSQLITRKNNH

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=256, Percent_Identity=70.703125, Blast_Score=363, Evalue=1e-102,
Organism=Escherichia coli, GI1787081, Length=231, Percent_Identity=43.2900432900433, Blast_Score=160, Evalue=7e-41,
Organism=Escherichia coli, GI1787714, Length=244, Percent_Identity=27.4590163934426, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1788764, Length=211, Percent_Identity=27.9620853080569, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28433; Mature: 28302

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SRLLRNAFMFVVYAYLYIPIIILVTNSFNKDRYGLSWKGFSWNWYERLFNNDTLIQAAI
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHH
HSVTIAFFAATLATIVGGLTAIALYRYRFRGKQAVSGMLFIVMMSPDIVMAVSLLALFMV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHEEEEECCHHHHHHHHHHHHHH
VGISLGFWSLLLAHVTFCLPYVTVTIFSRLNGFDSRMLEAAKDLGASEVTILRKIILPLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LPAVVSGWLLSFTISLDDVVVSSFVSGVSYEILPLRIFSLVKTGVTPEVNALATIMIVLS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LALVVLSQLITRKNNH
HHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]