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The map label for this gene is rarD [C]

Identifier: 148826668

GI number: 148826668

Start: 1720893

End: 1721771

Strand: Direct

Name: rarD [C]

Synonym: CGSHiEE_08695

Alternate gene names: 148826668

Gene position: 1720893-1721771 (Clockwise)

Preceding gene: 148826667

Following gene: 148826669

Centisome position: 94.92

GC content: 35.15

Gene sequence:

>879_bases
ATGTTTAAAGGTATTCTCGTTTCATTATTAGCCTCTTTTCTATTTGGCTATATGTATTATTTTTCTACGTTACTAAAACC
TTTGAGTGGCACAGATATTTTCGGTTATCGGATGATATTTACTTTTCCTTTTGTCCTGTTGTCCGTCACATTATTTAAAC
AAAAAGCGGCTTTAATTGAACGTTTAAAACGCATTCAAAAACGACCGCACTTAGCATTGTCATATTTACTTTGCGGATTA
TTAATGGGTTTTCAAATGTGGCTTTTTCTTTGGGCACCGAATAATGGCAGTTCATTAAGCGTATCTTTTGGTTATCTACT
TTTACCAATTGTAATGGTGGCGGCAGGTCGCGTGTTTTTTAAAGAACGCATTTCAACATTCAAATTTATTGCAGTTATCA
TTGCAACATTAGGCGTAATTTCTAATATTGTGCTAAAAGGCGGTCTTTCTTGGGAAGCCATTGTTATCTGTTTAGGTTAC
ACCGCATATTTTTCTATCCGAAAAGCATTAAAAAATACCGATCTTGCCTCCTTTTGTTTAGAAATGTTAAGCCTTATGCC
TGTCAGTATTTATTTTGCTTTACAAACAGATTTCGCGACAGTACAACAAACCAATCCGTTTATTTGGGGGCTTCTTGTAT
TACTAGGATTAATCAGCGGTACTGCGTTAATTGCCTATGTAATAGCCAGTAATATGCTTCCTATGAATTTACTCGGTCTG
CTTGGTTATGTTGAAACTATTATGATGCTATGCGTATCATTTTTGATCGGAGAACAAATTGATAGCGAAAGCTACCCACT
TTTTATTTGCTTAGTCATCGCAATGATTCTTGTTATGGTTGATGGCGTTTACAAACAACACGCAAAAGGAAGTTTATAA

Upstream 100 bases:

>100_bases
GGTATTTGCACCCAAAAAAGAAATCTCGAACAGCCCCTAGTCCGTGCATTTTGGGCGATGTTAGAATAGAATAAATAATG
GTTTAAAATAAGGATTTCTT

Downstream 100 bases:

>100_bases
ATGTCATTTAAAGAAATAACTCCACAGCAGGCTTGGGAAATGATGCAACAAGGCGCAATATTAGTCGATATTCGAGATAA
TATGCGCTTTGCTTATTCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MFKGILVSLLASFLFGYMYYFSTLLKPLSGTDIFGYRMIFTFPFVLLSVTLFKQKAALIERLKRIQKRPHLALSYLLCGL
LMGFQMWLFLWAPNNGSSLSVSFGYLLLPIVMVAAGRVFFKERISTFKFIAVIIATLGVISNIVLKGGLSWEAIVICLGY
TAYFSIRKALKNTDLASFCLEMLSLMPVSIYFALQTDFATVQQTNPFIWGLLVLLGLISGTALIAYVIASNMLPMNLLGL
LGYVETIMMLCVSFLIGEQIDSESYPLFICLVIAMILVMVDGVYKQHAKGSL

Sequences:

>Translated_292_residues
MFKGILVSLLASFLFGYMYYFSTLLKPLSGTDIFGYRMIFTFPFVLLSVTLFKQKAALIERLKRIQKRPHLALSYLLCGL
LMGFQMWLFLWAPNNGSSLSVSFGYLLLPIVMVAAGRVFFKERISTFKFIAVIIATLGVISNIVLKGGLSWEAIVICLGY
TAYFSIRKALKNTDLASFCLEMLSLMPVSIYFALQTDFATVQQTNPFIWGLLVLLGLISGTALIAYVIASNMLPMNLLGL
LGYVETIMMLCVSFLIGEQIDSESYPLFICLVIAMILVMVDGVYKQHAKGSL
>Mature_292_residues
MFKGILVSLLASFLFGYMYYFSTLLKPLSGTDIFGYRMIFTFPFVLLSVTLFKQKAALIERLKRIQKRPHLALSYLLCGL
LMGFQMWLFLWAPNNGSSLSVSFGYLLLPIVMVAAGRVFFKERISTFKFIAVIIATLGVISNIVLKGGLSWEAIVICLGY
TAYFSIRKALKNTDLASFCLEMLSLMPVSIYFALQTDFATVQQTNPFIWGLLVLLGLISGTALIAYVIASNMLPMNLLGL
LGYVETIMMLCVSFLIGEQIDSESYPLFICLVIAMILVMVDGVYKQHAKGSL

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=289, Percent_Identity=26.9896193771626, Blast_Score=98, Evalue=5e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32565; Mature: 32565

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]