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The map label for this gene is radC [C]

Identifier: 148826397

GI number: 148826397

Start: 1432166

End: 1432810

Strand: Direct

Name: radC [C]

Synonym: CGSHiEE_07200

Alternate gene names: 148826397

Gene position: 1432166-1432810 (Clockwise)

Preceding gene: 148826391

Following gene: 148826398

Centisome position: 78.99

GC content: 34.57

Gene sequence:

>645_bases
ATGCCACGGGAAAAATTGCTGGCATCCGGAGCAAAAGCATTAAGTGATTATGAACTACTTGCGATTTTTTTACGTACTGG
TATCAAAGGTTGTCCTGTTATATCACTTTCTAAAAATGTATTAACGCATTTTGGCTCCTTGCACGCTTTACTTTCCTCAG
ATAAAAAAGCTTTCTGTTCTGTAAAAGGCTTAGGTATTACGCAATTTATTCAACTACAAGCGATTACGGAAATGACCAAG
CGTTATTTAAAGCAAGAGATGTTAAGTACGCCGATTATTAATGATCCTGAAACTGTAAAACTTTTTTTACTCACTGAATT
GCAACACGAAGAAAGAGAAGTGTTTATGGTTTTATTTTTGGATAATCAACATCGTCTGATTAAAAAAGAGCGGTTATTTT
TAGGTACAATTAATGTATCAGCGGTTTATCCTCGAGAAATTATTAAAGAAGCACTCTATTGTAATGCGGCAGCTTTAATT
TTGGCACATAATCATCCTTCAGGTGTAACGGAGCCGAGTTATTCGGATCAGCTTATTACTAAAAAAATTCAAGATGCAGC
TGAACTAATGGAAATTTGCGTGCTTGATCATTTAATTGTAGGGAAAAGCGATTGTTATTCTTTCGCAGAGAATTGTTTAT
TATAA

Upstream 100 bases:

>100_bases
CATCGCAGATTTTGAATCACTTGCTCGTCAAAGCTAAAAAGTGCGGTCAAAATCTTTCTTATTTTTCTTTCATAAATTTA
TGGAAAACAATGATGATTTA

Downstream 100 bases:

>100_bases
TTTTTTATAATATTGACTATTTTTTTACCGATTACATTCAGGAAAATCGCATTTACACTTGAGAAATGAAAACAAAGTCA
GTATAATTTGCGGCCTTTAA

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 213

Protein sequence:

>214_residues
MPREKLLASGAKALSDYELLAIFLRTGIKGCPVISLSKNVLTHFGSLHALLSSDKKAFCSVKGLGITQFIQLQAITEMTK
RYLKQEMLSTPIINDPETVKLFLLTELQHEEREVFMVLFLDNQHRLIKKERLFLGTINVSAVYPREIIKEALYCNAAALI
LAHNHPSGVTEPSYSDQLITKKIQDAAELMEICVLDHLIVGKSDCYSFAENCLL

Sequences:

>Translated_214_residues
MPREKLLASGAKALSDYELLAIFLRTGIKGCPVISLSKNVLTHFGSLHALLSSDKKAFCSVKGLGITQFIQLQAITEMTK
RYLKQEMLSTPIINDPETVKLFLLTELQHEEREVFMVLFLDNQHRLIKKERLFLGTINVSAVYPREIIKEALYCNAAALI
LAHNHPSGVTEPSYSDQLITKKIQDAAELMEICVLDHLIVGKSDCYSFAENCLL
>Mature_213_residues
PREKLLASGAKALSDYELLAIFLRTGIKGCPVISLSKNVLTHFGSLHALLSSDKKAFCSVKGLGITQFIQLQAITEMTKR
YLKQEMLSTPIINDPETVKLFLLTELQHEEREVFMVLFLDNQHRLIKKERLFLGTINVSAVYPREIIKEALYCNAAALIL
AHNHPSGVTEPSYSDQLITKKIQDAAELMEICVLDHLIVGKSDCYSFAENCLL

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=214, Percent_Identity=50, Blast_Score=228, Evalue=2e-61,
Organism=Escherichia coli, GI1788312, Length=113, Percent_Identity=54.8672566371681, Blast_Score=127, Evalue=7e-31,
Organism=Escherichia coli, GI2367100, Length=104, Percent_Identity=57.6923076923077, Blast_Score=127, Evalue=7e-31,
Organism=Escherichia coli, GI1788997, Length=104, Percent_Identity=56.7307692307692, Blast_Score=125, Evalue=1e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 24009; Mature: 23877

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPREKLLASGAKALSDYELLAIFLRTGIKGCPVISLSKNVLTHFGSLHALLSSDKKAFCS
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCHHHHE
VKGLGITQFIQLQAITEMTKRYLKQEMLSTPIINDPETVKLFLLTELQHEEREVFMVLFL
ECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEHHCCCCCEEEEEEEE
DNQHRLIKKERLFLGTINVSAVYPREIIKEALYCNAAALILAHNHPSGVTEPSYSDQLIT
CCCHHHHHHHHEEEEEECCCEECHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCHHHHH
KKIQDAAELMEICVLDHLIVGKSDCYSFAENCLL
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
>Mature Secondary Structure 
PREKLLASGAKALSDYELLAIFLRTGIKGCPVISLSKNVLTHFGSLHALLSSDKKAFCS
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCHHHHE
VKGLGITQFIQLQAITEMTKRYLKQEMLSTPIINDPETVKLFLLTELQHEEREVFMVLFL
ECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEHHCCCCCEEEEEEEE
DNQHRLIKKERLFLGTINVSAVYPREIIKEALYCNAAALILAHNHPSGVTEPSYSDQLIT
CCCHHHHHHHHEEEEEECCCEECHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCHHHHH
KKIQDAAELMEICVLDHLIVGKSDCYSFAENCLL
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA