| Definition | Haemophilus influenzae PittEE chromosome, complete genome. |
|---|---|
| Accession | NC_009566 |
| Length | 1,813,033 |
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The map label for this gene is yhdJ [C]
Identifier: 148826327
GI number: 148826327
Start: 1343865
End: 1346006
Strand: Direct
Name: yhdJ [C]
Synonym: CGSHiEE_06790
Alternate gene names: 148826327
Gene position: 1343865-1346006 (Clockwise)
Preceding gene: 148826326
Following gene: 148826329
Centisome position: 74.12
GC content: 36.13
Gene sequence:
>2142_bases ATGAAGACAGACATTCAAACCGAATTAACCCAAGCCCTGCGATCACACGAAAAAGTATGGGAAAACGAAGAAAAAACCAT TTTAGCCAAAAACATTCTGTTGGATTTGGTGGAAAAAACCGACCCGACTATTATCGGGTTGTTATTGGGGAATGATGAGT TAAAACGCCATTTTTTTGTGGAAGTGAATGGCGTTTTGGTGTTTAAATTGCAGGATTTTCGTTTTTTCTTGGACAAACAC AGCCTCAATAATTCCTACACAAAATACGCCAATCGCATTGGCTTGACGGACGGCAACCGCTTTTTGAAAGACAGTAGCGA TATTGTATTGGATTTTCCGTTTAAAGATTGTGTGTTAAATGGCGGACAAAGCACCGAGGAAGGCGAAGAGATTTATTTTA AACGCAATAATGACCAGTCAGATAGTCAGTTATACAAAAAAGAAAAGCGAAAAAGACAAGAAATATTTTTTAATCAAACC CTTGCTTTTGATGAAATTGACCGACTTTTTGACGCAAAAGCATTCTCAAAATTCTCTCGCCACACCGCAGATGGCAAACA ACCCGTTGGCGAAATCAAACGCCATTTTGACGGCACGCCAGCCGAAAATCTTATTATCAAAGGCAATAATCTAATAGCCC TGCATTCGCTTGCCAAGCAGTTTAAAGGCAAAGTGAAGCTGATTTATATTGACCCGCCATATAACACGGGTAATGACGGT TTCAAATACAACGACAAATTTAATCATTCCACTTGGCTGACTTTTATGAAAAATCGCCTCGAAGTAGCGCGTGAGCTTTT GAGTGATGATGGCGTTATATTCGTGCAATGCGACGACAACGAACAAGCATATCTTAAAGTGCTTATGGATGAGATTTTTG GTAGAGAAAATTTTATTTGTTGCATTACTTGCAAAGTAAAAAGCGCCGGCGGACTTACAACCGATACGGAAATGTTTTTT GATTGTGCCGAGTATTTAATTGTTTATTCTAAGAGTATAGATAGTTTGCAATATAATTCAATTAAAATTCAAACAGAAGT TATAAACGCAAGCTCCAAGACGGTAAAACAATATAAAAATATCATTAATAATATTGACTTTAGTAAAAAAGAGTTTATTG CACAAAAAGATGAAATTAAGTACTACAAAATTCCAAAAGGCAGTTTCAATATCGAAACTTTGCCTATTAAGCAAATTAAG CAAATGACTGAGAAAGATTTTTTCGAGAAAAGAGATGAAATTTTTAGATTAACTGCATTAAGCGGAGGAATTGGCAAAAA AATAAAGGCGCACATTGAGGATTTTACTAATAATGATGATTTGTTTATGTTTGAATATATTCCTAGCAAAGGAAAAGATA AAGGAAAAATGTCTCAGTATTTTTTATTTAAAAGCCAGACGGTTACTATGCTAAACAAATTAGTAGATGTGGATTTTAAT AAGCAAAGAATTATAAAATTAGAGCCTATAAGCAACATAATATCGGATGATTTGTGGCAAGGTATTTCAAAAGAAGGGCA GATACAATTTAAAAACGCCAAAAAACCAGAAACTCTACTTCAACGAATAATAGAAATTTCAACCAACGAAAACGACATAG TCCTTGACTTCTTTGCTGGAAGCGGAACAACTGCGGCGGTTGCGATGAAAATGAATAGACAATTTATTACTATCGAACAG ATGGATTATATTGAAACGATAACAAAAGAGAGGCTTAAAAAGGTGATTGAGGGCGAACAAGGCGGCGTAAGCAGGGCTTT GGGTTGGCAAGGTGGTGGCGAGTTTGTTTATGCCGAACTTGCTCCATTTAACGAAACCGCAAAACAACAAATTTTGACTT GTGAAAATTCAGACGACATCAAAACGCTGTTTAATGAATTATACGAACGCTATTTCCTAAAATACAACGTCAGCGTGGAT GAATTTAGTCAAATGATTAACGAGCCTGAATTTCAAGCCTTGCCATTAGACGAACAAAAACAAATGGTGCTTGAAATGTT GGATTTAAATCAAATGTATGTTTCATTATCCGAAATGGACGATGAACAATTTGCAGGTTGCCTGAACGATGACGATAAAG CGTTAAGCCGTGCGTTCTATCAATCAGTAAAAAACCAAGCGGAGAAAAAAGATGGCGAATGA
Upstream 100 bases:
>100_bases TTAAGAGAGTAATTAAACCTGTACGGTCGATAAATATACCTAAACACTCTGCTATTCCTTTGTAATAGCACATTAAAATA ACTTATGAGGATTGATAACG
Downstream 100 bases:
>100_bases TAAAACTTTGTTTGAAGTAATTGAAAACCGCAAAGCTGTGTATTTGGAAGACGGAGATGATGAAAAATGCAGGCTGCCTG AATTTGTAGAACGCAATTTA
Product: putative type III restriction/modification system modification methylase
Products: NA
Alternate protein names: M.HindVIP; HindVIP methyltransferase [H]
Number of amino acids: Translated: 713; Mature: 713
Protein sequence:
>713_residues MKTDIQTELTQALRSHEKVWENEEKTILAKNILLDLVEKTDPTIIGLLLGNDELKRHFFVEVNGVLVFKLQDFRFFLDKH SLNNSYTKYANRIGLTDGNRFLKDSSDIVLDFPFKDCVLNGGQSTEEGEEIYFKRNNDQSDSQLYKKEKRKRQEIFFNQT LAFDEIDRLFDAKAFSKFSRHTADGKQPVGEIKRHFDGTPAENLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYNTGNDG FKYNDKFNHSTWLTFMKNRLEVARELLSDDGVIFVQCDDNEQAYLKVLMDEIFGRENFICCITCKVKSAGGLTTDTEMFF DCAEYLIVYSKSIDSLQYNSIKIQTEVINASSKTVKQYKNIINNIDFSKKEFIAQKDEIKYYKIPKGSFNIETLPIKQIK QMTEKDFFEKRDEIFRLTALSGGIGKKIKAHIEDFTNNDDLFMFEYIPSKGKDKGKMSQYFLFKSQTVTMLNKLVDVDFN KQRIIKLEPISNIISDDLWQGISKEGQIQFKNAKKPETLLQRIIEISTNENDIVLDFFAGSGTTAAVAMKMNRQFITIEQ MDYIETITKERLKKVIEGEQGGVSRALGWQGGGEFVYAELAPFNETAKQQILTCENSDDIKTLFNELYERYFLKYNVSVD EFSQMINEPEFQALPLDEQKQMVLEMLDLNQMYVSLSEMDDEQFAGCLNDDDKALSRAFYQSVKNQAEKKDGE
Sequences:
>Translated_713_residues MKTDIQTELTQALRSHEKVWENEEKTILAKNILLDLVEKTDPTIIGLLLGNDELKRHFFVEVNGVLVFKLQDFRFFLDKH SLNNSYTKYANRIGLTDGNRFLKDSSDIVLDFPFKDCVLNGGQSTEEGEEIYFKRNNDQSDSQLYKKEKRKRQEIFFNQT LAFDEIDRLFDAKAFSKFSRHTADGKQPVGEIKRHFDGTPAENLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYNTGNDG FKYNDKFNHSTWLTFMKNRLEVARELLSDDGVIFVQCDDNEQAYLKVLMDEIFGRENFICCITCKVKSAGGLTTDTEMFF DCAEYLIVYSKSIDSLQYNSIKIQTEVINASSKTVKQYKNIINNIDFSKKEFIAQKDEIKYYKIPKGSFNIETLPIKQIK QMTEKDFFEKRDEIFRLTALSGGIGKKIKAHIEDFTNNDDLFMFEYIPSKGKDKGKMSQYFLFKSQTVTMLNKLVDVDFN KQRIIKLEPISNIISDDLWQGISKEGQIQFKNAKKPETLLQRIIEISTNENDIVLDFFAGSGTTAAVAMKMNRQFITIEQ MDYIETITKERLKKVIEGEQGGVSRALGWQGGGEFVYAELAPFNETAKQQILTCENSDDIKTLFNELYERYFLKYNVSVD EFSQMINEPEFQALPLDEQKQMVLEMLDLNQMYVSLSEMDDEQFAGCLNDDDKALSRAFYQSVKNQAEKKDGE >Mature_713_residues MKTDIQTELTQALRSHEKVWENEEKTILAKNILLDLVEKTDPTIIGLLLGNDELKRHFFVEVNGVLVFKLQDFRFFLDKH SLNNSYTKYANRIGLTDGNRFLKDSSDIVLDFPFKDCVLNGGQSTEEGEEIYFKRNNDQSDSQLYKKEKRKRQEIFFNQT LAFDEIDRLFDAKAFSKFSRHTADGKQPVGEIKRHFDGTPAENLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYNTGNDG FKYNDKFNHSTWLTFMKNRLEVARELLSDDGVIFVQCDDNEQAYLKVLMDEIFGRENFICCITCKVKSAGGLTTDTEMFF DCAEYLIVYSKSIDSLQYNSIKIQTEVINASSKTVKQYKNIINNIDFSKKEFIAQKDEIKYYKIPKGSFNIETLPIKQIK QMTEKDFFEKRDEIFRLTALSGGIGKKIKAHIEDFTNNDDLFMFEYIPSKGKDKGKMSQYFLFKSQTVTMLNKLVDVDFN KQRIIKLEPISNIISDDLWQGISKEGQIQFKNAKKPETLLQRIIEISTNENDIVLDFFAGSGTTAAVAMKMNRQFITIEQ MDYIETITKERLKKVIEGEQGGVSRALGWQGGGEFVYAELAPFNETAKQQILTCENSDDIKTLFNELYERYFLKYNVSVD EFSQMINEPEFQALPLDEQKQMVLEMLDLNQMYVSLSEMDDEQFAGCLNDDDKALSRAFYQSVKNQAEKKDGE
Specific function: Unknown
COG id: COG2189
COG function: function code L; Adenine specific DNA methylase Mod
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002941 - InterPro: IPR002052 - InterPro: IPR001091 [H]
Pfam domain/function: PF01555 N6_N4_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 82388; Mature: 82388
Theoretical pI: Translated: 5.06; Mature: 5.06
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTDIQTELTQALRSHEKVWENEEKTILAKNILLDLVEKTDPTIIGLLLGNDELKRHFFV CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHCEEEEE EVNGVLVFKLQDFRFFLDKHSLNNSYTKYANRIGLTDGNRFLKDSSDIVLDFPFKDCVLN EECCEEEEEEECHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHCCCCCEEEECCHHHHHCC GGQSTEEGEEIYFKRNNDQSDSQLYKKEKRKRQEIFFNQTLAFDEIDRLFDAKAFSKFSR CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH HTADGKQPVGEIKRHFDGTPAENLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYNTGNDG HCCCCCCCHHHHHHHCCCCCCCCEEEECCCEEEHHHHHHHHCCCEEEEEECCCCCCCCCC FKYNDKFNHSTWLTFMKNRLEVARELLSDDGVIFVQCDDNEQAYLKVLMDEIFGRENFIC CEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEE CITCKVKSAGGLTTDTEMFFDCAEYLIVYSKSIDSLQYNSIKIQTEVINASSKTVKQYKN EEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECEEEEEEEEECCCHHHHHHHHH IINNIDFSKKEFIAQKDEIKYYKIPKGSFNIETLPIKQIKQMTEKDFFEKRDEIFRLTAL HHHCCCCCHHHHHCCCCCCEEEECCCCCCCEEECCHHHHHHHHHHHHHHHHHHEEEEEEC SGGIGKKIKAHIEDFTNNDDLFMFEYIPSKGKDKGKMSQYFLFKSQTVTMLNKLVDVDFN CCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHEEEECHHHHHHHHHHHCCCCC KQRIIKLEPISNIISDDLWQGISKEGQIQFKNAKKPETLLQRIIEISTNENDIVLDFFAG CCEEEEECCHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECC SGTTAAVAMKMNRQFITIEQMDYIETITKERLKKVIEGEQGGVSRALGWQGGGEFVYAEL CCCEEEEEEEECCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCEEEEEE APFNETAKQQILTCENSDDIKTLFNELYERYFLKYNVSVDEFSQMINEPEFQALPLDEQK CCCCHHHHHHEEECCCCCHHHHHHHHHHHHHHHEECCCHHHHHHHHCCCCCEECCCCHHH QMVLEMLDLNQMYVSLSEMDDEQFAGCLNDDDKALSRAFYQSVKNQAEKKDGE HHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MKTDIQTELTQALRSHEKVWENEEKTILAKNILLDLVEKTDPTIIGLLLGNDELKRHFFV CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHCEEEEE EVNGVLVFKLQDFRFFLDKHSLNNSYTKYANRIGLTDGNRFLKDSSDIVLDFPFKDCVLN EECCEEEEEEECHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHCCCCCEEEECCHHHHHCC GGQSTEEGEEIYFKRNNDQSDSQLYKKEKRKRQEIFFNQTLAFDEIDRLFDAKAFSKFSR CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH HTADGKQPVGEIKRHFDGTPAENLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYNTGNDG HCCCCCCCHHHHHHHCCCCCCCCEEEECCCEEEHHHHHHHHCCCEEEEEECCCCCCCCCC FKYNDKFNHSTWLTFMKNRLEVARELLSDDGVIFVQCDDNEQAYLKVLMDEIFGRENFIC CEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEE CITCKVKSAGGLTTDTEMFFDCAEYLIVYSKSIDSLQYNSIKIQTEVINASSKTVKQYKN EEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECEEEEEEEEECCCHHHHHHHHH IINNIDFSKKEFIAQKDEIKYYKIPKGSFNIETLPIKQIKQMTEKDFFEKRDEIFRLTAL HHHCCCCCHHHHHCCCCCCEEEECCCCCCCEEECCHHHHHHHHHHHHHHHHHHEEEEEEC SGGIGKKIKAHIEDFTNNDDLFMFEYIPSKGKDKGKMSQYFLFKSQTVTMLNKLVDVDFN CCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHEEEECHHHHHHHHHHHCCCCC KQRIIKLEPISNIISDDLWQGISKEGQIQFKNAKKPETLLQRIIEISTNENDIVLDFFAG CCEEEEECCHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECC SGTTAAVAMKMNRQFITIEQMDYIETITKERLKKVIEGEQGGVSRALGWQGGGEFVYAEL CCCEEEEEEEECCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCEEEEEE APFNETAKQQILTCENSDDIKTLFNELYERYFLKYNVSVDEFSQMINEPEFQALPLDEQK CCCCHHHHHHEEECCCCCHHHHHHHHHHHHHHHEECCCHHHHHHHHCCCCCEECCCCHHH QMVLEMLDLNQMYVSLSEMDDEQFAGCLNDDDKALSRAFYQSVKNQAEKKDGE HHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]