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The map label for this gene is ybaQ [C]

Identifier: 148825844

GI number: 148825844

Start: 825559

End: 825882

Strand: Direct

Name: ybaQ [C]

Synonym: CGSHiEE_04015

Alternate gene names: 148825844

Gene position: 825559-825882 (Clockwise)

Preceding gene: 148825843

Following gene: 148825845

Centisome position: 45.53

GC content: 34.57

Gene sequence:

>324_bases
ATGATGACGAGAAAACCCACCTCTGTTGGTGAAATTCTACAAGAAGAGTTTTTAGAACCTTTAAGTCTTAAAATTAGTGA
TTTAGCTCAAATTTTAGATGTACATCGTAATACGGCAAGCAATATTGTTAATAATAGTTCACGAATTACGCTAGAAATGG
CAGTTAAACTTGCTAAAGTATTTGATACTACGCCTGAGTTTTGGCTTAATCTGCAAACACGTATTGATTTATGGGACCTT
GAACACAATAAACGTTTTCAACAAAGTCTTGCAAATGTTAAGCCCGCTCTACATCGGCATGATACTTCTACATTTGCAAT
GTAA

Upstream 100 bases:

>100_bases
CGAGTGAATAAACAATATCGTTTAATTTTTAAATATGAAAATAACGAAGTAAATAATTTATATTTAGATCCACATTCTTA
TAATTTGTAAGGAGGATAAT

Downstream 100 bases:

>100_bases
TTTGAGCCCTAAAGTGTCTATTTAATTTAGGGAATACTTCACTCTAAATATTGACAAGTGGTTAGGTTTCGCCAAACTTT
TGCAAAATCTGTCCACTTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 107; Mature: 107

Protein sequence:

>107_residues
MMTRKPTSVGEILQEEFLEPLSLKISDLAQILDVHRNTASNIVNNSSRITLEMAVKLAKVFDTTPEFWLNLQTRIDLWDL
EHNKRFQQSLANVKPALHRHDTSTFAM

Sequences:

>Translated_107_residues
MMTRKPTSVGEILQEEFLEPLSLKISDLAQILDVHRNTASNIVNNSSRITLEMAVKLAKVFDTTPEFWLNLQTRIDLWDL
EHNKRFQQSLANVKPALHRHDTSTFAM
>Mature_107_residues
MMTRKPTSVGEILQEEFLEPLSLKISDLAQILDVHRNTASNIVNNSSRITLEMAVKLAKVFDTTPEFWLNLQTRIDLWDL
EHNKRFQQSLANVKPALHRHDTSTFAM

Specific function: Unknown

COG id: COG3093

COG function: function code R; Plasmid maintenance system antidote protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI87081745, Length=92, Percent_Identity=56.5217391304348, Blast_Score=116, Evalue=3e-28,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): Y1251_HAEIN (Q57089)

Other databases:

- EMBL:   L42023
- PIR:   H64112
- RefSeq:   NP_439407.1
- ProteinModelPortal:   Q57089
- SMR:   Q57089
- GeneID:   950190
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI1251
- TIGR:   HI_1251
- HOGENOM:   HBG665723
- OMA:   ILTEEFM
- ProtClustDB:   CLSK808501
- BioCyc:   HINF71421:HI_1251-MONOMER
- GO:   GO:0006350
- InterPro:   IPR013430
- InterPro:   IPR001387
- InterPro:   IPR010982
- SMART:   SM00530
- TIGRFAMs:   TIGR02607

Pfam domain/function: PF01381 HTH_3; SSF47413 Lambda_like_DNA

EC number: NA

Molecular weight: Translated: 12347; Mature: 12347

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTRKPTSVGEILQEEFLEPLSLKISDLAQILDVHRNTASNIVNNSSRITLEMAVKLAKV
CCCCCCCHHHHHHHHHHHCHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHH
FDTTPEFWLNLQTRIDLWDLEHNKRFQQSLANVKPALHRHDTSTFAM
HCCCHHHHEEHHHHCEEECCCCHHHHHHHHHHHHHHHHHCCCHHCCC
>Mature Secondary Structure
MMTRKPTSVGEILQEEFLEPLSLKISDLAQILDVHRNTASNIVNNSSRITLEMAVKLAKV
CCCCCCCHHHHHHHHHHHCHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHH
FDTTPEFWLNLQTRIDLWDLEHNKRFQQSLANVKPALHRHDTSTFAM
HCCCHHHHEEHHHHCEEECCCCHHHHHHHHHHHHHHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800