Click here to switch to the map view.

The map label for this gene is ycbB [C]

Identifier: 148825793

GI number: 148825793

Start: 763977

End: 765446

Strand: Direct

Name: ycbB [C]

Synonym: CGSHiEE_03720

Alternate gene names: 148825793

Gene position: 763977-765446 (Clockwise)

Preceding gene: 148825792

Following gene: 148825794

Centisome position: 42.14

GC content: 35.44

Gene sequence:

>1470_bases
ATGGTAGTGTTTAAAAGCACCTTAAAGTTATCATTATTCGCCTTATCATTATCTATGATGATGTCGGGTTGTGTTTTAGT
AGGTTTGAGCAAAAATGACCAATCTAAATCATTGTACGGCATTAATCTTTCCCATTTGTCATTCGCAGAAAGAAAAGAGC
TTGAAGAAGCCATTTATGCGGATCAGCAACGTTTAACGGAAGAAAAACAAACATTGCTTAATATGACGCTAACACACGAA
ATAGGCGATCATAAGTTACAATTTAAGCCTTTACTCGCGCGTTTATATGCTTCTCGTAAATATGCCCCGTTATGGACTGA
CAATGCGGCAGCTCGTCAATTGTTACGTGATTATGCGGCAATGGTGGCAAGCGGTATTTCAAAATCGTCGGCAACTTCAC
TAGAAACATTGGCATTGGTAGAACAACAAGGTGGATTGGCTTATGATGTGTTATTAAGTGATATTTTGTTAGATTACTTA
TATTACACACAAAATGTTTGTGCTCAAGCATCGAATTGGTTGTATTCATCTGATCAATATCAAGCAAAACAGCCTGAAAA
TGATCATATTCAACGCTGGTTAAGTGCGGTGGAAAATAATCAACTTCTTGATTTCATACAAAGTTTAGCGGGAGAAAATC
ATTTATATCGCCAAACAGTTCAAGCATTGCCGATGTTTATTCCGACTTCTAAAGAATCAAATATTGCTCAAAAACTGGCA
ATGAATGCACAGCGTTTACGCGTAATTCCTGATTTTCATAATGGGATTTTTGTGAATATTCCAAGCTATAAATTACAGTA
TTATCGTGATGGCGATTTAATTTTAGAATCTCGGGTAATTGTTGGCAAAAATTCTCGTCGAACCCCCGTGATGTATAGCA
AATTAAGTAATGTGGTTGTAAATCCGCCTTGGAATGCGCCAATTCGCTTAATTAATGAAGATTTACTGCCAAAAATGAAA
GCCGATCCAAATTATATTACGGAGCATAATTATTCAATTTTAGATAATCAAGGCAATGTTGTTGATCCTGCTTCTATTGA
TTGGGAATCTATTGGTAATAAATTTCCTTATCGAGTTCGACAAGCGGCTGGCGATAGTGCGTTAGGTAATTATAAATTTA
ATATGCCAAGTTCTGATGCAATTTATTTACACGATACGCCAAATCGCGGATTGTTTAATCGTAAAAATCGAGCGTTAAGT
TCTGGCTGTGTACGTATTGAAAAATCAGATCAATTGGCAAGTATTTTATTAAAAGAAGCAGGTTGGACAGAAACTCGAAA
AAATACAGTATTAGCAAGTAAAAAAACCACTTCTGCGCCGATACGCTCGGATAATCCTGTTTTTTTATATTATGTTACTG
CGTGGATTGAAAACGGAAATATTGTAAATTTACCTGATATTTATGGTTATGATCGTCAGATTAATCTTGCTGAGATTAAT
TGGGATCTCGTAAAAAAATATCTTCAATAA

Upstream 100 bases:

>100_bases
GAAGCAAAAACGGAAAGTAAAAAATAAATACTAAATGGTTTTGACCGCACTTTGTTTGAGAAAAGCAACAAGTGCGGTGA
TTTTAATAAAGGTTTAGGAA

Downstream 100 bases:

>100_bases
AATAAGGGAGCTATAATGAATTCTGTGGATCAGAATAAACGAAAATGGTTATCGCTGGGCGGTATTGCGTTAGGAATATC
TATTTTACCAAATTCTGTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 489; Mature: 489

Protein sequence:

>489_residues
MVVFKSTLKLSLFALSLSMMMSGCVLVGLSKNDQSKSLYGINLSHLSFAERKELEEAIYADQQRLTEEKQTLLNMTLTHE
IGDHKLQFKPLLARLYASRKYAPLWTDNAAARQLLRDYAAMVASGISKSSATSLETLALVEQQGGLAYDVLLSDILLDYL
YYTQNVCAQASNWLYSSDQYQAKQPENDHIQRWLSAVENNQLLDFIQSLAGENHLYRQTVQALPMFIPTSKESNIAQKLA
MNAQRLRVIPDFHNGIFVNIPSYKLQYYRDGDLILESRVIVGKNSRRTPVMYSKLSNVVVNPPWNAPIRLINEDLLPKMK
ADPNYITEHNYSILDNQGNVVDPASIDWESIGNKFPYRVRQAAGDSALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALS
SGCVRIEKSDQLASILLKEAGWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWIENGNIVNLPDIYGYDRQINLAEIN
WDLVKKYLQ

Sequences:

>Translated_489_residues
MVVFKSTLKLSLFALSLSMMMSGCVLVGLSKNDQSKSLYGINLSHLSFAERKELEEAIYADQQRLTEEKQTLLNMTLTHE
IGDHKLQFKPLLARLYASRKYAPLWTDNAAARQLLRDYAAMVASGISKSSATSLETLALVEQQGGLAYDVLLSDILLDYL
YYTQNVCAQASNWLYSSDQYQAKQPENDHIQRWLSAVENNQLLDFIQSLAGENHLYRQTVQALPMFIPTSKESNIAQKLA
MNAQRLRVIPDFHNGIFVNIPSYKLQYYRDGDLILESRVIVGKNSRRTPVMYSKLSNVVVNPPWNAPIRLINEDLLPKMK
ADPNYITEHNYSILDNQGNVVDPASIDWESIGNKFPYRVRQAAGDSALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALS
SGCVRIEKSDQLASILLKEAGWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWIENGNIVNLPDIYGYDRQINLAEIN
WDLVKKYLQ
>Mature_489_residues
MVVFKSTLKLSLFALSLSMMMSGCVLVGLSKNDQSKSLYGINLSHLSFAERKELEEAIYADQQRLTEEKQTLLNMTLTHE
IGDHKLQFKPLLARLYASRKYAPLWTDNAAARQLLRDYAAMVASGISKSSATSLETLALVEQQGGLAYDVLLSDILLDYL
YYTQNVCAQASNWLYSSDQYQAKQPENDHIQRWLSAVENNQLLDFIQSLAGENHLYRQTVQALPMFIPTSKESNIAQKLA
MNAQRLRVIPDFHNGIFVNIPSYKLQYYRDGDLILESRVIVGKNSRRTPVMYSKLSNVVVNPPWNAPIRLINEDLLPKMK
ADPNYITEHNYSILDNQGNVVDPASIDWESIGNKFPYRVRQAAGDSALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALS
SGCVRIEKSDQLASILLKEAGWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWIENGNIVNLPDIYGYDRQINLAEIN
WDLVKKYLQ

Specific function: Unknown

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=242, Percent_Identity=50, Blast_Score=241, Evalue=9e-65,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 55487; Mature: 55487

Theoretical pI: Translated: 8.58; Mature: 8.58

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVFKSTLKLSLFALSLSMMMSGCVLVGLSKNDQSKSLYGINLSHLSFAERKELEEAIYA
CEEECCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCEEEEECHHHHHHHHHHHHHHHHHH
DQQRLTEEKQTLLNMTLTHEIGDHKLQFKPLLARLYASRKYAPLWTDNAAARQLLRDYAA
HHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
MVASGISKSSATSLETLALVEQQGGLAYDVLLSDILLDYLYYTQNVCAQASNWLYSSDQY
HHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
QAKQPENDHIQRWLSAVENNQLLDFIQSLAGENHLYRQTVQALPMFIPTSKESNIAQKLA
CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHCCEECCCCCCHHHHHHHH
MNAQRLRVIPDFHNGIFVNIPSYKLQYYRDGDLILESRVIVGKNSRRTPVMYSKLSNVVV
CCHHHEEECCCCCCCEEEECCCEEEEEEECCCEEEEEEEEECCCCCCCCHHHHHHCCEEE
NPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIGNKFPYRVR
CCCCCCCHHHHCHHHCCCCCCCCCEECCCCCEEECCCCCCCCCCCCCHHHHCCCCCHHHH
QAAGDSALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALSSGCVRIEKSDQLASILLKEA
HHCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCHHHHCCCEEEECCHHHHHHHHHHC
GWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWIENGNIVNLPDIYGYDRQINLAEIN
CCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCCCCCEEEEEECC
WDLVKKYLQ
HHHHHHHHC
>Mature Secondary Structure
MVVFKSTLKLSLFALSLSMMMSGCVLVGLSKNDQSKSLYGINLSHLSFAERKELEEAIYA
CEEECCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCEEEEECHHHHHHHHHHHHHHHHHH
DQQRLTEEKQTLLNMTLTHEIGDHKLQFKPLLARLYASRKYAPLWTDNAAARQLLRDYAA
HHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
MVASGISKSSATSLETLALVEQQGGLAYDVLLSDILLDYLYYTQNVCAQASNWLYSSDQY
HHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
QAKQPENDHIQRWLSAVENNQLLDFIQSLAGENHLYRQTVQALPMFIPTSKESNIAQKLA
CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHCCEECCCCCCHHHHHHHH
MNAQRLRVIPDFHNGIFVNIPSYKLQYYRDGDLILESRVIVGKNSRRTPVMYSKLSNVVV
CCHHHEEECCCCCCCEEEECCCEEEEEEECCCEEEEEEEEECCCCCCCCHHHHHHCCEEE
NPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIGNKFPYRVR
CCCCCCCHHHHCHHHCCCCCCCCCEECCCCCEEECCCCCCCCCCCCCHHHHCCCCCHHHH
QAAGDSALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALSSGCVRIEKSDQLASILLKEA
HHCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCHHHHCCCEEEECCHHHHHHHHHHC
GWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWIENGNIVNLPDIYGYDRQINLAEIN
CCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCCCCCEEEEEECC
WDLVKKYLQ
HHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]