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The map label for this gene is rpoZ [H]

Identifier: 148825720

GI number: 148825720

Start: 668209

End: 668475

Strand: Direct

Name: rpoZ [H]

Synonym: CGSHiEE_03325

Alternate gene names: 148825720

Gene position: 668209-668475 (Clockwise)

Preceding gene: 148825719

Following gene: 148825721

Centisome position: 36.86

GC content: 37.45

Gene sequence:

>267_bases
ATGGCTCGTGTTACTGTGCAAGATGCGGTAGAAAAAATTGGTAACCGTTTTGATTTAATTTTAACGGCAGCGCGTCGTGC
AAGACAATTACAACTTAACCAAAGTGTGCCGTTAGTGCCAGAAGATAATGACAAACCAACAGTAATTGCATTACGTGAAA
TCGAAAAAGGTTTGATTAATCAAGATATTATGGATGCACAAGAATTCCAAAAAATGGCGAAAGTGCAAGAAACGGAAGAA
GCAGCTGTTGCATTAATTACAGAATAA

Upstream 100 bases:

>100_bases
AAAATGCAATGTTAATTCAACAGCTACTAGCAGAATAGGGCGAAATTGAGTATTATAACGCCCTTTCAATAGAGTAATTT
TTGACAAATCGGAGTAAATT

Downstream 100 bases:

>100_bases
TATTTTAAAAGTGCGGTAAAAAATCACGATATTTTAACTGCACTTTCTCTTTCAACGATAAGTAGGTCTCCTTTGGAACT
GTTTGCGGATTTAGATCGAA

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega [H]

Number of amino acids: Translated: 88; Mature: 87

Protein sequence:

>88_residues
MARVTVQDAVEKIGNRFDLILTAARRARQLQLNQSVPLVPEDNDKPTVIALREIEKGLINQDIMDAQEFQKMAKVQETEE
AAVALITE

Sequences:

>Translated_88_residues
MARVTVQDAVEKIGNRFDLILTAARRARQLQLNQSVPLVPEDNDKPTVIALREIEKGLINQDIMDAQEFQKMAKVQETEE
AAVALITE
>Mature_87_residues
ARVTVQDAVEKIGNRFDLILTAARRARQLQLNQSVPLVPEDNDKPTVIALREIEKGLINQDIMDAQEFQKMAKVQETEEA
AVALITE

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits [H]

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family [H]

Homologues:

Organism=Escherichia coli, GI1790081, Length=65, Percent_Identity=78.4615384615385, Blast_Score=104, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293 [H]

Pfam domain/function: PF01192 RNA_pol_Rpb6 [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 9889; Mature: 9757

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVTVQDAVEKIGNRFDLILTAARRARQLQLNQSVPLVPEDNDKPTVIALREIEKGLIN
CCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHHCC
QDIMDAQEFQKMAKVQETEEAAVALITE
CHHCCHHHHHHHHHHHHHHHHHEEEECC
>Mature Secondary Structure 
ARVTVQDAVEKIGNRFDLILTAARRARQLQLNQSVPLVPEDNDKPTVIALREIEKGLIN
CCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHHCC
QDIMDAQEFQKMAKVQETEEAAVALITE
CHHCCHHHHHHHHHHHHHHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA