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The map label for this gene is comD [H]

Identifier: 148825284

GI number: 148825284

Start: 155679

End: 156092

Strand: Direct

Name: comD [H]

Synonym: CGSHiEE_00810

Alternate gene names: 148825284

Gene position: 155679-156092 (Clockwise)

Preceding gene: 148825283

Following gene: 148825285

Centisome position: 8.59

GC content: 36.96

Gene sequence:

>414_bases
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA

Upstream 100 bases:

>100_bases
CTAATTCGTCACAGCTTTCAGTGAGTCGCTTGCAGTTTATCAAACCCGAAGACAACCCATTGCAAACCGAGATCATTTTT
CAGCTAGATAAGGAAACAAA

Downstream 100 bases:

>100_bases
AGGAAGATTATGAAGAAATATTTTTTAAAGTGCGGTTATTTTTTAGTGTGTTTTTGTTTGCCATTAATCGTTTTTGCTAA
TCCTAAAACAGATAACGAAT

Product: competence protein D

Products: NA

Alternate protein names: DNA transformation protein ComD [H]

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:

>137_residues
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF

Sequences:

>Translated_137_residues
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
>Mature_137_residues
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016506
- InterPro:   IPR007446 [H]

Pfam domain/function: PF04351 PilP [H]

EC number: NA

Molecular weight: Translated: 15696; Mature: 15696

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENR
CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
QAAEIPLNALKLVGVVISKDKAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFM
CHHHCCHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHCCHHHCCEEEEECCCCHHHHH
RKLGEQCDSSEWKKLSF
HHHHHHCCCCCHHCCCC
>Mature Secondary Structure
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENR
CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
QAAEIPLNALKLVGVVISKDKAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFM
CHHHCCHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHCCHHHCCEEEEECCCCHHHHH
RKLGEQCDSSEWKKLSF
HHHHHHCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 7542800 [H]