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The map label for this gene is rpe [H]

Identifier: 148825155

GI number: 148825155

Start: 29078

End: 29752

Strand: Direct

Name: rpe [H]

Synonym: CGSHiEE_00135

Alternate gene names: 148825155

Gene position: 29078-29752 (Clockwise)

Preceding gene: 148825154

Following gene: 148825156

Centisome position: 1.6

GC content: 41.48

Gene sequence:

>675_bases
ATGAAACCTTATCTTATCGCCCCATCAATTCTTTCTGCTGATCTTGCACGTCTTGGCGATGACGTACAAAACGTACTTAA
TGCAGGCGCGGATGTTATTCATTTTGATGTTATGGATAATCATTATGTACCTAATCTCACTTTTGGGCCTGCAGTATGTC
AAGCCTTACGTGATTATGGCATTACCGCACCGATTGATGTGCATTTAATGGTAAAACCCGTTGATCGCATTATTCCTGAT
TTTGCTAAAGCAGGTGCGAATTACATCACTTTCCACCCAGAATCTAGCGAACATATTGACCGCTCTTTGCAGCTTATTCG
CGATTGTGGTTGTAAATCTGGATTAGTGTTTAATCCTGCCACGCCGTTGAGTTATTTAGATTACGTTTTGGATAAAGTGG
ATGTGGTTTTATTAATGTCAGTGAATCCCGGATTTGGTGGACAATCTTTTATTCCAGCAACATTGAAGAAATTACAACAG
GCTCGTAAGATCATTGATGAAAGTGGTTATGACATTCGTCTTGAAGTAGATGGTGGCGTGAAAGTTGATAACATCGCAGA
AATCGCCGCGGCGGGCGCAGATATGTTCGTGGCGGGTTCTGCAATTTTTGGTAAGCCAGATTATAAACAAGTGATTGACC
AAATGCGTACACAGTTAGCGAGTGTGATCGCATAA

Upstream 100 bases:

>100_bases
TTTCTTCGTTTATCTTGTTATTTCATTTCAGGATGGCTATTGGTTTTTTGAACTGAAGTGAGTAAACTAAGCTCAGTCAT
TTTCTCAACGGAGAACCTTT

Downstream 100 bases:

>100_bases
CTGTTATTTTAATGGAATGGGATTGCAACAAAATAGAGAAAAACAATGAATACACAATTTAAACTGATTGGTTTTGATTT
AGATGGCACCTTGGTAAATA

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MKPYLIAPSILSADLARLGDDVQNVLNAGADVIHFDVMDNHYVPNLTFGPAVCQALRDYGITAPIDVHLMVKPVDRIIPD
FAKAGANYITFHPESSEHIDRSLQLIRDCGCKSGLVFNPATPLSYLDYVLDKVDVVLLMSVNPGFGGQSFIPATLKKLQQ
ARKIIDESGYDIRLEVDGGVKVDNIAEIAAAGADMFVAGSAIFGKPDYKQVIDQMRTQLASVIA

Sequences:

>Translated_224_residues
MKPYLIAPSILSADLARLGDDVQNVLNAGADVIHFDVMDNHYVPNLTFGPAVCQALRDYGITAPIDVHLMVKPVDRIIPD
FAKAGANYITFHPESSEHIDRSLQLIRDCGCKSGLVFNPATPLSYLDYVLDKVDVVLLMSVNPGFGGQSFIPATLKKLQQ
ARKIIDESGYDIRLEVDGGVKVDNIAEIAAAGADMFVAGSAIFGKPDYKQVIDQMRTQLASVIA
>Mature_224_residues
MKPYLIAPSILSADLARLGDDVQNVLNAGADVIHFDVMDNHYVPNLTFGPAVCQALRDYGITAPIDVHLMVKPVDRIIPD
FAKAGANYITFHPESSEHIDRSLQLIRDCGCKSGLVFNPATPLSYLDYVLDKVDVVLLMSVNPGFGGQSFIPATLKKLQQ
ARKIIDESGYDIRLEVDGGVKVDNIAEIAAAGADMFVAGSAIFGKPDYKQVIDQMRTQLASVIA

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=213, Percent_Identity=41.3145539906103, Blast_Score=162, Evalue=2e-40,
Organism=Homo sapiens, GI219879828, Length=213, Percent_Identity=39.906103286385, Blast_Score=153, Evalue=1e-37,
Organism=Homo sapiens, GI24307923, Length=169, Percent_Identity=34.3195266272189, Blast_Score=97, Evalue=1e-20,
Organism=Escherichia coli, GI1789788, Length=222, Percent_Identity=79.2792792792793, Blast_Score=374, Evalue=1e-105,
Organism=Escherichia coli, GI1790523, Length=221, Percent_Identity=35.7466063348416, Blast_Score=147, Evalue=4e-37,
Organism=Escherichia coli, GI1790754, Length=213, Percent_Identity=30.5164319248826, Blast_Score=105, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17552948, Length=229, Percent_Identity=37.9912663755458, Blast_Score=150, Evalue=4e-37,
Organism=Saccharomyces cerevisiae, GI6322341, Length=233, Percent_Identity=36.0515021459227, Blast_Score=150, Evalue=1e-37,
Organism=Drosophila melanogaster, GI24586301, Length=211, Percent_Identity=42.1800947867299, Blast_Score=163, Evalue=7e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 24290; Mature: 24290

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1 ; PS01086 RIBUL_P_3_EPIMER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPYLIAPSILSADLARLGDDVQNVLNAGADVIHFDVMDNHYVPNLTFGPAVCQALRDYG
CCCCEECHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCC
ITAPIDVHLMVKPVDRIIPDFAKAGANYITFHPESSEHIDRSLQLIRDCGCKSGLVFNPA
CCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEECCC
TPLSYLDYVLDKVDVVLLMSVNPGFGGQSFIPATLKKLQQARKIIDESGYDIRLEVDGGV
CHHHHHHHHHHHHCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
KVDNIAEIAAAGADMFVAGSAIFGKPDYKQVIDQMRTQLASVIA
CHHHHHHHHHCCCCCEEECCHHCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKPYLIAPSILSADLARLGDDVQNVLNAGADVIHFDVMDNHYVPNLTFGPAVCQALRDYG
CCCCEECHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCC
ITAPIDVHLMVKPVDRIIPDFAKAGANYITFHPESSEHIDRSLQLIRDCGCKSGLVFNPA
CCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEECCC
TPLSYLDYVLDKVDVVLLMSVNPGFGGQSFIPATLKKLQQARKIIDESGYDIRLEVDGGV
CHHHHHHHHHHHHCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
KVDNIAEIAAAGADMFVAGSAIFGKPDYKQVIDQMRTQLASVIA
CHHHHHHHHHCCCCCEEECCHHCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]