Click here to switch to the map view.

The map label for this gene is ykoU [H]

Identifier: 148824935

GI number: 148824935

Start: 4193681

End: 4194721

Strand: Reverse

Name: ykoU [H]

Synonym: TBFG_13762

Alternate gene names: 148824935

Gene position: 4194721-4193681 (Counterclockwise)

Preceding gene: 148824938

Following gene: 148824927

Centisome position: 94.81

GC content: 66.38

Gene sequence:

>1041_bases
ATGGCGGCGGCAGCTGAGGAACTCGACGTCGACGGCATCGCGGTGCGGTTGACTAGCCCGGACAGGATGTATTTCCCGAA
GCTGGGGTCGCACGGCACCAAGCGCCGCCTCGTTGAGTACTACTTCGCCGTGGCCGGGGGTCCGATGCTGACGGCGCTGC
GTGACCGGCCGACGCACTTGCAGCGCTTCCCGGACGGCGTCGACGGCGAGCAGATCTACCAAAAGCGGATCCCGCGGCAC
CGCCCTGACTACCTGCAGACGTGCCGGGTGACGTTTCCGTCGGGGCGGATGGCTGACGCGCTGAAGGTGACCCACCCGGC
GGCGATCGTATGGGCGGCGCAGATGGGCACAATCACCCTGCACCCGTGGCAAGTGCGCTGCCCCGACACCGAGCACCCCG
ACGAATTGCGCATCGATCTAGATCCGCAACCGGGCACCGGCTTCGTGGAGGCGCGTACGGTCGCCGTCGATGTGCTCCGG
TCCGTGCTGGACGACCTCGGTCTGGTCGGTTATCCGAAGACATCCGGGGGTAGAGGGATTCACGTATTCCTGCGCATCGC
CACCGACTGGGACTTCGTCGAGGTGCGTCGGGCGGGCATTGCGTTGGCCCGGGAAGTCGAGCGCCGCGCACCGGATGCGG
TGACGACGTCGTGGTGGAAGGAAGAACGGGGCGCGCGTATCTTCATCGACTTCAACCAAAACGCCCGCGACCGCACCATG
GCGTCGGCCTATTCGGTGCGTCCTACCCCGATCGCGACGGTATCGATGCCGTTGACCTGGGAAGAGCTGGCCGGCGCGGA
TCCCGACGACTACACCATGACCACGGTGCCCGAGCTGGTGAAGATCCGCGACGACCCCTGGGCCGGCATGGACGACGTGG
CCCAGTCGATTGCACCATTGCTGGACTTGGCCGCCGCCGACGAGGAGCGCGGGCTCGGTGACATGCCGTATCCGCCGAAC
TATCCGAAGATGCCGGGCGAACCCAAGCGGGTGCAGCCGAGCCGGGATACCGACTTGAAGGGGGGAAACACGTCGAAGTA
A

Upstream 100 bases:

>100_bases
CGGGATTGCGGTGACCGATTTGGCCAGCATCGGCGACACCGGCGGCATGACGGGTAACTGCATGTGCTCATTCTTGCGTG
CGGCATGCTGGAATTCCGAT

Downstream 100 bases:

>100_bases
CGCGGTGCGGCTCGCTCCTCAGATGCGGGAAATGCGATTGGTCTGTCCCACATTTCCTGGATTATCACGGCTTTTCCGCG
ATCATCAACGTGTATCCGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 345

Protein sequence:

>346_residues
MAAAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHLQRFPDGVDGEQIYQKRIPRH
RPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITLHPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLR
SVLDDLGLVGYPKTSGGRGIHVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTM
ASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPLLDLAAADEERGLGDMPYPPN
YPKMPGEPKRVQPSRDTDLKGGNTSK

Sequences:

>Translated_346_residues
MAAAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHLQRFPDGVDGEQIYQKRIPRH
RPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITLHPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLR
SVLDDLGLVGYPKTSGGRGIHVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTM
ASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPLLDLAAADEERGLGDMPYPPN
YPKMPGEPKRVQPSRDTDLKGGNTSK
>Mature_345_residues
AAAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHLQRFPDGVDGEQIYQKRIPRHR
PDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITLHPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRS
VLDDLGLVGYPKTSGGRGIHVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTMA
SAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPLLDLAAADEERGLGDMPYPPNY
PKMPGEPKRVQPSRDTDLKGGNTSK

Specific function: Probably involved in the repair of DNA double-strand breaks by non-homologous-end joining (NHEJ) during spore germination [H]

COG id: COG3285

COG function: function code L; Predicted eukaryotic-type DNA primase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012310
- InterPro:   IPR014146
- InterPro:   IPR014145
- InterPro:   IPR014143 [H]

Pfam domain/function: PF01068 DNA_ligase_A_M [H]

EC number: =6.5.1.1 [H]

Molecular weight: Translated: 38544; Mature: 38413

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHL
CCCCCCCCCCCCEEEEECCCCCEECCCCCCCCHHHHHHHHHHHHCCCHHEEHHCCCCHHH
QRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITL
HHCCCCCCHHHHHHHHCCCCCCCHHHEEEEECCCCCCCHHHEECCCEEEEEEEECCEEEE
HPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGI
CCEEEECCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEE
HVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTM
EEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEECCCCCCHHHH
ASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPL
HHHHCCCCCCEEEEECCCCHHHHCCCCCCCCEECCCHHHHEECCCCCCCHHHHHHHHHHH
LDLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTDLKGGNTSK
HHHHHCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AAAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHL
CCCCCCCCCCCEEEEECCCCCEECCCCCCCCHHHHHHHHHHHHCCCHHEEHHCCCCHHH
QRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITL
HHCCCCCCHHHHHHHHCCCCCCCHHHEEEEECCCCCCCHHHEECCCEEEEEEEECCEEEE
HPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGI
CCEEEECCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEE
HVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTM
EEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEECCCCCCHHHH
ASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPL
HHHHCCCCCCEEEEECCCCHHHHCCCCCCCCEECCCHHHHEECCCCCCCHHHHHHHHHHH
LDLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTDLKGGNTSK
HHHHHCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]