Click here to switch to the map view.

The map label for this gene is oppA [H]

Identifier: 148824869

GI number: 148824869

Start: 4118460

End: 4120085

Strand: Reverse

Name: oppA [H]

Synonym: TBFG_13696

Alternate gene names: 148824869

Gene position: 4120085-4118460 (Counterclockwise)

Preceding gene: 148824872

Following gene: 148824868

Centisome position: 93.12

GC content: 64.94

Gene sequence:

>1626_bases
ATGGTGCGTCAGATGCGGGCGGCCCTGGCAGCCCTTGCCACCGGATTGCTGGTGCTTGCGCCAGTGGCCGGTTGTGGCGG
CGGTGTCCTGAGCCCTGACGTGGTGCTGGTCAACGGCGGGGAACCGCCCAACCCGCTGATCCCGACCGGCACCAACGACA
GCAACGGTGGGCGCATCATCGATCGGTTGTTCGCCGGCCTGATGTCCTATGACGCCGTTGGCAAGCCGTCGCTGGAGGTC
GCGCAGTCAATCGAGAGCGCCGATAACGTCAACTACCGGATCACTGTCAAACCCGGCTGGAAGTTCACCGACGGCTCGCC
GGTGACGGCCCACTCGTTCGTCGACGCGTGGAACTACGGAGCCCTGAGCACCAATGCCCAACTGCAGCAGCACTTTTTCA
GCCCGATCGAAGGGTTCGATGACGTGGCCGGCGCGCCAGGGGATAAGAGCCGGACCACCATGTCCGGGTTGCGCGTGGTC
AACGACCTGGAGTTCACCGTGCGGCTTAAGGCGCCGACCATCGACTTCACGTTGCGCCTTGGCCACAGCTCGTTTTATCC
GCTGCCGGACTCCGCATTTCGGGACATGGCCGCGTTCGGCCGCAACCCGATCGGCAACGGCCCGTACAAACTCGCCGACG
GCCCAGCCGGGCCGGCCTGGGAACACAACGTCAGAATCGACCTGGTGCCCAACCCCGACTACCACGGCAACCGCAAGCCC
CGTAACAAAGGTTTGCGATTCGAGTTCTACGCCAATCTGGACACCGCCTATGCCGACTTGCTGTCCGGCAATCTCGATGT
CCTGGACACGATTCCGCCGAGCGCGTTGACGGTCTACCAGCGCGACCTGGGCGACCACGCTACCAGCGGGCCCGCAGCGA
TCAATCAGACCCTCGACACTCCGTTGCGGCTGCCGCATTTCGGTGGCGAGGAGGGGCGGCTGCGCCGGTTGGCGCTGTCG
GCCGCCATCAACCGGCCGCAAATCTGCCAGCAGATCTTCGCCGGAACCCGCAGTCCGGCCCGCGATTTCACCGCCCGGTC
GTTGCCGGGCTTCGATCCCAACCTGCCGGGCAACGAGGTGCTGGACTACGACCCGCAGCGGGCTCGGCGGCTCTGGGCGC
AGGCCGATGCGATCTCACCGTGGAGCGGCCGGTACGCGATCGCCTATAACGCTGACGCTGGCCATCGGGATTGGGTGGAC
GCGGTGGCCAACAGCATCAAGAACGTGTTGGGCATCGATGCGGTGGCCGCGCCGCAGCCCACCTTCGCCGGATTTCGCAC
CCAGATCACCAACCGCGCCATCGACAGTGCATTTCGCGCTGGATGGCGGGGCGACTACCCGTCGATGATCGAGTTTCTCG
CTCCGCTGTTCACCGCCGGCGCCGGATCCAACGACGTCGGCTACATCAACCCGGAATTCGACGCGGCGCTGGCCGCCGCC
GAAGCCGCCCCCACGTTAACCGAATCCCACGAGCTGGTCAACGACGCGCAGCGAATCCTGTTTCACGACATGCCAGTTGT
GCCGCTCTGGGATTACATCAGTGTCGTCGGATGGTCGTCGCAAGTCAGCAACGTCACCGTCACCTGGAATGGTCTGCCCG
ACTACGAGAACATCGTCAAGGCCTGA

Upstream 100 bases:

>100_bases
GTAGCTAACGGTCACCGGCGAGTGTGTCGGCTGCGCTGGCCAGGCCGCACTTCACCGGCTGGGGAGCCGGACTGCACAAG
AAGGCTTTAGGGTCGCTGTC

Downstream 100 bases:

>100_bases
CATGGGCTGGTATGTTGCGCGCCGAGTCGCCGTGATGGTGCCGGTTTTCCTGGGCGCGACACTGCTGATCTACGGCATGG
TCTTTCTGCTGCCCGGTGAC

Product: periplasmic dipeptide-binding lipoprotein dppA

Products: NA

Alternate protein names: Stage 0 sporulation protein KA [H]

Number of amino acids: Translated: 541; Mature: 541

Protein sequence:

>541_residues
MVRQMRAALAALATGLLVLAPVAGCGGGVLSPDVVLVNGGEPPNPLIPTGTNDSNGGRIIDRLFAGLMSYDAVGKPSLEV
AQSIESADNVNYRITVKPGWKFTDGSPVTAHSFVDAWNYGALSTNAQLQQHFFSPIEGFDDVAGAPGDKSRTTMSGLRVV
NDLEFTVRLKAPTIDFTLRLGHSSFYPLPDSAFRDMAAFGRNPIGNGPYKLADGPAGPAWEHNVRIDLVPNPDYHGNRKP
RNKGLRFEFYANLDTAYADLLSGNLDVLDTIPPSALTVYQRDLGDHATSGPAAINQTLDTPLRLPHFGGEEGRLRRLALS
AAINRPQICQQIFAGTRSPARDFTARSLPGFDPNLPGNEVLDYDPQRARRLWAQADAISPWSGRYAIAYNADAGHRDWVD
AVANSIKNVLGIDAVAAPQPTFAGFRTQITNRAIDSAFRAGWRGDYPSMIEFLAPLFTAGAGSNDVGYINPEFDAALAAA
EAAPTLTESHELVNDAQRILFHDMPVVPLWDYISVVGWSSQVSNVTVTWNGLPDYENIVKA

Sequences:

>Translated_541_residues
MVRQMRAALAALATGLLVLAPVAGCGGGVLSPDVVLVNGGEPPNPLIPTGTNDSNGGRIIDRLFAGLMSYDAVGKPSLEV
AQSIESADNVNYRITVKPGWKFTDGSPVTAHSFVDAWNYGALSTNAQLQQHFFSPIEGFDDVAGAPGDKSRTTMSGLRVV
NDLEFTVRLKAPTIDFTLRLGHSSFYPLPDSAFRDMAAFGRNPIGNGPYKLADGPAGPAWEHNVRIDLVPNPDYHGNRKP
RNKGLRFEFYANLDTAYADLLSGNLDVLDTIPPSALTVYQRDLGDHATSGPAAINQTLDTPLRLPHFGGEEGRLRRLALS
AAINRPQICQQIFAGTRSPARDFTARSLPGFDPNLPGNEVLDYDPQRARRLWAQADAISPWSGRYAIAYNADAGHRDWVD
AVANSIKNVLGIDAVAAPQPTFAGFRTQITNRAIDSAFRAGWRGDYPSMIEFLAPLFTAGAGSNDVGYINPEFDAALAAA
EAAPTLTESHELVNDAQRILFHDMPVVPLWDYISVVGWSSQVSNVTVTWNGLPDYENIVKA
>Mature_541_residues
MVRQMRAALAALATGLLVLAPVAGCGGGVLSPDVVLVNGGEPPNPLIPTGTNDSNGGRIIDRLFAGLMSYDAVGKPSLEV
AQSIESADNVNYRITVKPGWKFTDGSPVTAHSFVDAWNYGALSTNAQLQQHFFSPIEGFDDVAGAPGDKSRTTMSGLRVV
NDLEFTVRLKAPTIDFTLRLGHSSFYPLPDSAFRDMAAFGRNPIGNGPYKLADGPAGPAWEHNVRIDLVPNPDYHGNRKP
RNKGLRFEFYANLDTAYADLLSGNLDVLDTIPPSALTVYQRDLGDHATSGPAAINQTLDTPLRLPHFGGEEGRLRRLALS
AAINRPQICQQIFAGTRSPARDFTARSLPGFDPNLPGNEVLDYDPQRARRLWAQADAISPWSGRYAIAYNADAGHRDWVD
AVANSIKNVLGIDAVAAPQPTFAGFRTQITNRAIDSAFRAGWRGDYPSMIEFLAPLFTAGAGSNDVGYINPEFDAALAAA
EAAPTLTESHELVNDAQRILFHDMPVVPLWDYISVVGWSSQVSNVTVTWNGLPDYENIVKA

Specific function: This protein is a component of the oligopeptide permease, a binding protein-dependent transport system, It binds peptides up to five amino acids long with high affinity. Also required for sporulation and competence [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI87081878, Length=478, Percent_Identity=25.9414225941423, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI1787495, Length=526, Percent_Identity=25.2851711026616, Blast_Score=109, Evalue=4e-25,
Organism=Escherichia coli, GI1789397, Length=497, Percent_Identity=23.7424547283702, Blast_Score=89, Evalue=5e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 58382; Mature: 58382

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRQMRAALAALATGLLVLAPVAGCGGGVLSPDVVLVNGGEPPNPLIPTGTNDSNGGRII
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHH
DRLFAGLMSYDAVGKPSLEVAQSIESADNVNYRITVKPGWKFTDGSPVTAHSFVDAWNYG
HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCCEECCCCCCCHHHHHHHHCCC
ALSTNAQLQQHFFSPIEGFDDVAGAPGDKSRTTMSGLRVVNDLEFTVRLKAPTIDFTLRL
CCCCCHHHHHHHCCHHCCCHHHCCCCCCCCHHHHHHHHHEECCEEEEEEECCCEEEEEEE
GHSSFYPLPDSAFRDMAAFGRNPIGNGPYKLADGPAGPAWEHNVRIDLVPNPDYHGNRKP
CCCCCCCCCCHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCEEEEEECCCCCCCCCCC
RNKGLRFEFYANLDTAYADLLSGNLDVLDTIPPSALTVYQRDLGDHATSGPAAINQTLDT
CCCCCEEEEEECCHHHHHHHHCCCCCEEECCCCHHHHHHHHHHCCCCCCCCHHHHHHCCC
PLRLPHFGGEEGRLRRLALSAAINRPQICQQIFAGTRSPARDFTARSLPGFDPNLPGNEV
CCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCC
LDYDPQRARRLWAQADAISPWSGRYAIAYNADAGHRDWVDAVANSIKNVLGIDAVAAPQP
CCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
TFAGFRTQITNRAIDSAFRAGWRGDYPSMIEFLAPLFTAGAGSNDVGYINPEFDAALAAA
CHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHH
EAAPTLTESHELVNDAQRILFHDMPVVPLWDYISVVGWSSQVSNVTVTWNGLPDYENIVK
HCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHC
A
C
>Mature Secondary Structure
MVRQMRAALAALATGLLVLAPVAGCGGGVLSPDVVLVNGGEPPNPLIPTGTNDSNGGRII
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHH
DRLFAGLMSYDAVGKPSLEVAQSIESADNVNYRITVKPGWKFTDGSPVTAHSFVDAWNYG
HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCCEECCCCCCCHHHHHHHHCCC
ALSTNAQLQQHFFSPIEGFDDVAGAPGDKSRTTMSGLRVVNDLEFTVRLKAPTIDFTLRL
CCCCCHHHHHHHCCHHCCCHHHCCCCCCCCHHHHHHHHHEECCEEEEEEECCCEEEEEEE
GHSSFYPLPDSAFRDMAAFGRNPIGNGPYKLADGPAGPAWEHNVRIDLVPNPDYHGNRKP
CCCCCCCCCCHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCEEEEEECCCCCCCCCCC
RNKGLRFEFYANLDTAYADLLSGNLDVLDTIPPSALTVYQRDLGDHATSGPAAINQTLDT
CCCCCEEEEEECCHHHHHHHHCCCCCEEECCCCHHHHHHHHHHCCCCCCCCHHHHHHCCC
PLRLPHFGGEEGRLRRLALSAAINRPQICQQIFAGTRSPARDFTARSLPGFDPNLPGNEV
CCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCC
LDYDPQRARRLWAQADAISPWSGRYAIAYNADAGHRDWVDAVANSIKNVLGIDAVAAPQP
CCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
TFAGFRTQITNRAIDSAFRAGWRGDYPSMIEFLAPLFTAGAGSNDVGYINPEFDAALAAA
CHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHH
EAAPTLTESHELVNDAQRILFHDMPVVPLWDYISVVGWSSQVSNVTVTWNGLPDYENIVK
HCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHC
A
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1901616; 1899858; 9384377 [H]