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The map label for this gene is ycdC [C]

Identifier: 148824497

GI number: 148824497

Start: 3687781

End: 3688446

Strand: Direct

Name: ycdC [C]

Synonym: TBFG_13324

Alternate gene names: 148824497

Gene position: 3687781-3688446 (Clockwise)

Preceding gene: 148824495

Following gene: 148824498

Centisome position: 83.35

GC content: 65.32

Gene sequence:

>666_bases
ATGGCGACAGCCAGAAGGCGGTTATCCCCGCAGGACCGCCGCGCTGAACTGCTCGCTCTGGGGGCGGAGGTCTTTGGGAA
GCGGCCTTACGACGAGGTTCGCATCGATGAGATCGCCGAGCGCGCTGGGGTGTCGCGGGCACTGATGTATCACTACTTCC
CGGACAAGCGGGCGTTCTTCGCCGCGGTCGTCAAGGACGAGGCCGACCGGCTGTACGCGGCGACCAACAAGGCGCCCGCC
CCTGGGATGACGATGTTCGAAGAGATACGAACCGGCGTGCTGGCCTATATGGCCTACCACCAACAAAACCCCGAGGCGGC
GTGGGCCGCCTACGTCGGCCTCGGCCGATCGGACCCGGTTCTGCTCGGTATCGACGACGAAGCCAAGAACCGCCAGATGG
AACACATCATGTCCCGCATCGCCGAGGTCGTGAGCGGGATTGACCGCGATAACACCCTGGACCCAGAGGTCGAGCGCGAC
CTGCGGGTGATCATCCACGGCTGGCTGGCGTTCACCTTCGAGCTGTGTCGTCAGCGGATCATGGACCCGTCGACCGACGC
TGAACGGCTCGCCGATGCTTGCGCACACGCGCTGCTGGACGCCATCTCCCGGCTGCCGCAGATCCCTGCCGAACTGGCTG
ACGCGATGGCAACCGCGCGAATGTGA

Upstream 100 bases:

>100_bases
GTCGCAGCAGGGACGTCGGGGCAGACCCACCCCACCGAAAGAACCACCACCACCTGCTCGCCTAGCCGAACGTGTGGTCT
ACGTGAGTAATATCTGTCAC

Downstream 100 bases:

>100_bases
GCGGTAGGCGGTTTTTGTCGGTGCCTGTTGGCACGATGGCTAGGTGAGGTTCGCGCAGCCTTCAGCACTGAGCCGATTCA
GCGCGCTCACCCGAGACTGG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: TetR-Family Transcriptional Regulator; Transcriptional Regulator TetR Family; Transcriptional Regulator; Regulatory Protein TetR; Tetr Family Transcriptional Regulator; TetR-Family Transcriptional Regulatory Protein; Transcriptional Regulator TetR-Family

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MATARRRLSPQDRRAELLALGAEVFGKRPYDEVRIDEIAERAGVSRALMYHYFPDKRAFFAAVVKDEADRLYAATNKAPA
PGMTMFEEIRTGVLAYMAYHQQNPEAAWAAYVGLGRSDPVLLGIDDEAKNRQMEHIMSRIAEVVSGIDRDNTLDPEVERD
LRVIIHGWLAFTFELCRQRIMDPSTDAERLADACAHALLDAISRLPQIPAELADAMATARM

Sequences:

>Translated_221_residues
MATARRRLSPQDRRAELLALGAEVFGKRPYDEVRIDEIAERAGVSRALMYHYFPDKRAFFAAVVKDEADRLYAATNKAPA
PGMTMFEEIRTGVLAYMAYHQQNPEAAWAAYVGLGRSDPVLLGIDDEAKNRQMEHIMSRIAEVVSGIDRDNTLDPEVERD
LRVIIHGWLAFTFELCRQRIMDPSTDAERLADACAHALLDAISRLPQIPAELADAMATARM
>Mature_220_residues
ATARRRLSPQDRRAELLALGAEVFGKRPYDEVRIDEIAERAGVSRALMYHYFPDKRAFFAAVVKDEADRLYAATNKAPAP
GMTMFEEIRTGVLAYMAYHQQNPEAAWAAYVGLGRSDPVLLGIDDEAKNRQMEHIMSRIAEVVSGIDRDNTLDPEVERDL
RVIIHGWLAFTFELCRQRIMDPSTDAERLADACAHALLDAISRLPQIPAELADAMATARM

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24806; Mature: 24674

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATARRRLSPQDRRAELLALGAEVFGKRPYDEVRIDEIAERAGVSRALMYHYFPDKRAFF
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHCCCHHHHH
AAVVKDEADRLYAATNKAPAPGMTMFEEIRTGVLAYMAYHQQNPEAAWAAYVGLGRSDPV
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCE
LLGIDDEAKNRQMEHIMSRIAEVVSGIDRDNTLDPEVERDLRVIIHGWLAFTFELCRQRI
EEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
MDPSTDAERLADACAHALLDAISRLPQIPAELADAMATARM
CCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
ATARRRLSPQDRRAELLALGAEVFGKRPYDEVRIDEIAERAGVSRALMYHYFPDKRAFF
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHCCCHHHHH
AAVVKDEADRLYAATNKAPAPGMTMFEEIRTGVLAYMAYHQQNPEAAWAAYVGLGRSDPV
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCE
LLGIDDEAKNRQMEHIMSRIAEVVSGIDRDNTLDPEVERDLRVIIHGWLAFTFELCRQRI
EEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
MDPSTDAERLADACAHALLDAISRLPQIPAELADAMATARM
CCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA