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The map label for this gene is rbfA

Identifier: 148824028

GI number: 148824028

Start: 3156258

End: 3156809

Strand: Reverse

Name: rbfA

Synonym: TBFG_12853

Alternate gene names: 148824028

Gene position: 3156809-3156258 (Counterclockwise)

Preceding gene: 148824029

Following gene: 148824027

Centisome position: 71.35

GC content: 68.12

Gene sequence:

>552_bases
ATGGCTGATGCTGCTAGGGCGCGGCGGCTGGCCAAACGGATCGCCGCGATCGTCGCCTCGGCGATCGAGTACGAGATCAA
GGATCCTGGATTGGCCGGGGTGACCATCACCGATGCGAAGGTGACCGCCGACTTGCACGATGCCACGGTGTACTACACGG
TGATGGGACGCACGCTACACGACGAGCCGAACTGCGCCGGCGCGGCCGCCGCGCTGGAACGGGCCAAAGGGGTGCTGCGC
ACCAAGGTCGGGGCGGGCACCGGCGTTCGGTTCACTCCCACCTTGACGTTCACGCTCGACACGATCTCGGACAGTGTGCA
CCGGATGGACGAGTTGCTGGCCCGCGCTCGCGCCGCGGATGCCGATCTGGCGCGGGTCCGGGTGGGCGCCAAACCGGCGG
GGGAGGCCGACCCGTACCGTGATAACGGGTCGGTGGCGCAATCACCGGCTCCCGGGGGACTGGGTATCAGAACGAGCGAC
GGACCCGAGGCTGTGGAGGCACCGCTCACTTGCGGGGGAGACACCGGTGACGACGATCGACCCAAGGAGTGA

Upstream 100 bases:

>100_bases
TGCGCGACGGCTTCGAGTGTGGCCTGACACTGGGTTACGCCGACATCAAGGAGGGCGACGTCATCGAGTCCTACGAGCTG
GTCCAGAAGGAACGCGCCTG

Downstream 100 bases:

>100_bases
GCTGGTCGACGGGCGGCGTCGCGCGGGGGCCCGCGTGGACGCCGTCGGTGCCGCTGCGCTGTTGTCGGCCGCTGCCAGGG
TCGGGGTAGTCTGCCACGTC

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 182

Protein sequence:

>183_residues
MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLHDEPNCAGAAAALERAKGVLR
TKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAADADLARVRVGAKPAGEADPYRDNGSVAQSPAPGGLGIRTSD
GPEAVEAPLTCGGDTGDDDRPKE

Sequences:

>Translated_183_residues
MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLHDEPNCAGAAAALERAKGVLR
TKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAADADLARVRVGAKPAGEADPYRDNGSVAQSPAPGGLGIRTSD
GPEAVEAPLTCGGDTGDDDRPKE
>Mature_182_residues
ADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLHDEPNCAGAAAALERAKGVLRT
KVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAADADLARVRVGAKPAGEADPYRDNGSVAQSPAPGGLGIRTSDG
PEAVEAPLTCGGDTGDDDRPKE

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_MYCBO (P65965)

Other databases:

- EMBL:   BX248343
- RefSeq:   NP_856508.1
- ProteinModelPortal:   P65965
- SMR:   P65965
- EnsemblBacteria:   EBMYCT00000015402
- GeneID:   1092246
- GenomeReviews:   BX248333_GR
- KEGG:   mbo:Mb2863c
- GeneTree:   EBGT00050000017622
- HOGENOM:   HBG751055
- OMA:   TGDLHDA
- ProtClustDB:   PRK00521
- BioCyc:   MBOV233413:MB2863C-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 18998; Mature: 18867

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH
CCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEECCEEEECCCCCEEEEEEECCEEC
DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHCCC
ADLARVRVGAKPAGEADPYRDNGSVAQSPAPGGLGIRTSDGPEAVEAPLTCGGDTGDDDR
CHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCHHHHCCCCCCCCCCCCCCC
PKE
CCC
>Mature Secondary Structure 
ADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH
CCHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEECCEEEECCCCCEEEEEEECCEEC
DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHCCC
ADLARVRVGAKPAGEADPYRDNGSVAQSPAPGGLGIRTSDGPEAVEAPLTCGGDTGDDDR
CHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCHHHHCCCCCCCCCCCCCCC
PKE
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972