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The map label for this gene is yagA [H]

Identifier: 148824001

GI number: 148824001

Start: 3128773

End: 3130182

Strand: Direct

Name: yagA [H]

Synonym: TBFG_12826

Alternate gene names: 148824001

Gene position: 3128773-3130182 (Clockwise)

Preceding gene: 148824000

Following gene: 148824002

Centisome position: 70.72

GC content: 68.23

Gene sequence:

>1410_bases
GTGGCGGTCGGCGATGACGAGGAGAAGGTGCGCGCGGAGCGCGCGAGGGCGATCGGGTTGTTTCGCTACCAGTTGATTTG
GGAGGCCGCCGATGCGGCGCATTCCACCAAGCAGCGGGGAAAGATGGTGCGCGAGTTGGCCTCACGCGAGCACACCGATC
CGTTCGGGCGGCGGGTGCGCATCAGCCGCCAAACCATCGACCGCTGGATCCGGGGCTGGCGGGCCGGCGGGTTCGACGCG
CTGGTGCCCAACCCACGCCAGTGCACACCGCGTACCCCGGCCGAGGTGCTGGAGCTGGCGGTGGCGCTGCGGCGGGAAAA
CCCGCAGCGCACGGCGGCGGCAATCCGGCGGATCCTGCGTACCCAGTTGGGCTGGGCGCCCGATGAACGCACCCTGCAAC
GCAACTTCCACCGGCTCGGGCTCACCGGCGCCACCACCGGGTCGGCGCCGGCGGTGTTCGGCCGGTTCGAAGCCGAGCAC
CCGAACGCCCTGTGGACCGGGGATGTGTTGCACGGCATACGGATTGATCTCCGCAAGACCTATCTGTTCGCGTTCTTAGA
CGACCATTCCCGGTTGGTGCCCGGCTACCGGTGGGGCCATGCCGAGGACACGGTGCGGCTGGCCGCCGCACTGCGCCCGG
CGCTGGCCTCCCGCGGCGTGCCCAACGCGGTGTATGTCGATAACGGCTCGCCCTATGTGGATGCGTGGTTGTTGCGGGCA
TGCGCGAAACTCGGTGTGCGCCTTGTTCATTCCACGCCAGGTCGGCCGCAAGGCAGGGGCAAGATAGAGAGGTTCTTCCG
CACCGTGCGCGAGCAGTTCCTGGTCGAGATCACCGGCGAACCCGACGTCGTCGGCCGACATTACGTCGCTGATCTGGCCG
AGTTGAATCGGCTGTTTACGGCCTGGGTCGAAACGGTTTATCACCGCAGCGTGCATTCCGAAACCGGGCAGACCCCGCTG
GCCCGCTGGTCAGCCGGCGGCCCCATCCCGCTGCCCGCCCCCGAGACGCTCACCGAGGCCTTCCTGTGGGAGGAGCACCG
CCGCGTGACCAAGACCGCCACCGTCTCGCTGCACGGCAACCGCTACGAGATCGACCCGGCGCTGGTCGGCCGGAAAGTGG
AGTTGGTGTTCGACCCGTTCGATTTGACCCGCATCGAGGTGCGGCTGGCCGGCGCGCCGATGGGGCGGGCCATTCCGTAT
CACATCGGGCGCCATTCACACCCGAAAGCCAAACCCGAAACCCCCACCGCACCGCCCAAACCCAGCGGCATCGACTACGC
GCAGTTAATCGAGACCGCGCACGCAGCCGAACTCGCCCGCGGCGTCAACTACACCGCCCTCACCGGGGCTGCCGATCAGA
TCCCCGGCCAGCTCGACCTGCTCACCGGCCAGGAGGCCCAACCGAAATGA

Upstream 100 bases:

>100_bases
TGGGTGCAACACGAGTCGACCCTGCCGTAGCCGTCGATCGGGCCGTAAACCTGTGCGCTGTCGTGTGTTTTGACAGACAG
CAAATGGAAAGGAGCGGCCG

Downstream 100 bases:

>100_bases
TGCACAAACTGATCTCGTATTACGGTTTTTCGCGCATGCCATTCGGCCGCGATCTGGCACCGGGCATGCTGCATCGCCAC
AGCGCGCACAACGAAGCGGT

Product: transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 469; Mature: 468

Protein sequence:

>469_residues
MAVGDDEEKVRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTIDRWIRGWRAGGFDA
LVPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILRTQLGWAPDERTLQRNFHRLGLTGATTGSAPAVFGRFEAEH
PNALWTGDVLHGIRIDLRKTYLFAFLDDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRA
CAKLGVRLVHSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADLAELNRLFTAWVETVYHRSVHSETGQTPL
ARWSAGGPIPLPAPETLTEAFLWEEHRRVTKTATVSLHGNRYEIDPALVGRKVELVFDPFDLTRIEVRLAGAPMGRAIPY
HIGRHSHPKAKPETPTAPPKPSGIDYAQLIETAHAAELARGVNYTALTGAADQIPGQLDLLTGQEAQPK

Sequences:

>Translated_469_residues
MAVGDDEEKVRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTIDRWIRGWRAGGFDA
LVPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILRTQLGWAPDERTLQRNFHRLGLTGATTGSAPAVFGRFEAEH
PNALWTGDVLHGIRIDLRKTYLFAFLDDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRA
CAKLGVRLVHSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADLAELNRLFTAWVETVYHRSVHSETGQTPL
ARWSAGGPIPLPAPETLTEAFLWEEHRRVTKTATVSLHGNRYEIDPALVGRKVELVFDPFDLTRIEVRLAGAPMGRAIPY
HIGRHSHPKAKPETPTAPPKPSGIDYAQLIETAHAAELARGVNYTALTGAADQIPGQLDLLTGQEAQPK
>Mature_468_residues
AVGDDEEKVRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTIDRWIRGWRAGGFDAL
VPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILRTQLGWAPDERTLQRNFHRLGLTGATTGSAPAVFGRFEAEHP
NALWTGDVLHGIRIDLRKTYLFAFLDDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRAC
AKLGVRLVHSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADLAELNRLFTAWVETVYHRSVHSETGQTPLA
RWSAGGPIPLPAPETLTEAFLWEEHRRVTKTATVSLHGNRYEIDPALVGRKVELVFDPFDLTRIEVRLAGAPMGRAIPYH
IGRHSHPKAKPETPTAPPKPSGIDYAQLIETAHAAELARGVNYTALTGAADQIPGQLDLLTGQEAQPK

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=266, Percent_Identity=30.0751879699248, Blast_Score=90, Evalue=4e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 52338; Mature: 52207

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVGDDEEKVRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVR
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEE
ISRQTIDRWIRGWRAGGFDALVPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILR
EHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
TQLGWAPDERTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRIDLRKT
HHCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCEEECHHHHHHHHHHHHE
YLFAFLDDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRA
EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHH
CAKLGVRLVHSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADLAELNRLFT
HHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHH
AWVETVYHRSVHSETGQTPLARWSAGGPIPLPAPETLTEAFLWEEHRRVTKTATVSLHGN
HHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHEEEEEEEECCC
RYEIDPALVGRKVELVFDPFDLTRIEVRLAGAPMGRAIPYHIGRHSHPKAKPETPTAPPK
EEECCHHHHCCEEEEEECCCCCEEEEEEEECCCCCCCCCHHCCCCCCCCCCCCCCCCCCC
PSGIDYAQLIETAHAAELARGVNYTALTGAADQIPGQLDLLTGQEAQPK
CCCCCHHHHHHHHHHHHHHHCCCCEEECCCHHHCCCCEEEECCCCCCCC
>Mature Secondary Structure 
AVGDDEEKVRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEE
ISRQTIDRWIRGWRAGGFDALVPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILR
EHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
TQLGWAPDERTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRIDLRKT
HHCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCEEECHHHHHHHHHHHHE
YLFAFLDDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRA
EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHH
CAKLGVRLVHSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADLAELNRLFT
HHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHH
AWVETVYHRSVHSETGQTPLARWSAGGPIPLPAPETLTEAFLWEEHRRVTKTATVSLHGN
HHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHEEEEEEEECCC
RYEIDPALVGRKVELVFDPFDLTRIEVRLAGAPMGRAIPYHIGRHSHPKAKPETPTAPPK
EEECCHHHHCCEEEEEECCCCCEEEEEEEECCCCCCCCCHHCCCCCCCCCCCCCCCCCCC
PSGIDYAQLIETAHAAELARGVNYTALTGAADQIPGQLDLLTGQEAQPK
CCCCCHHHHHHHHHHHHHHHCCCCEEECCCHHHCCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 8113168 [H]