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The map label for this gene is ideR [H]

Identifier: 148823976

GI number: 148823976

Start: 3108914

End: 3109600

Strand: Direct

Name: ideR [H]

Synonym: TBFG_12801

Alternate gene names: 148823976

Gene position: 3108914-3109600 (Clockwise)

Preceding gene: 148823975

Following gene: 148823987

Centisome position: 70.27

GC content: 68.12

Gene sequence:

>687_bases
GTGAGGGCTGACGAGGAGCCTGGCGATCTTAGCGCGGTTGCGCAGGACTATCTGAAGGTCATCTGGACCGCCCAGGAGTG
GTCGCAGGACAAGGTCAGCACCAAGATGCTGGCCGAGAGGATCGGGGTGTCGGCCAGCACGGCCTCGGAGTCCATTCGCA
AGCTCGCCGAGCAGGGCTTGGTCGACCACGAGAAGTACGGCGCGGTGACGTTGACCGATTCGGGGCGACGAGCCGCGCTG
GCAATGGTGCGCCGGCACCGGCTACTGGAGACATTCCTGGTCAACGAGCTCGGCTACCGCTGGGACGAGGTGCACGACGA
GGCCGAGGTGCTCGAGCACGCGGTCTCGGATCGCTTGATGGCCCGCATCGACGCCAAGCTGGGGTTCCCGCAGCGCGATC
CGCACGGTGACCCGATCCCGGGCGCCGACGGGCAAGTGCCCACGCCACCGGCTCGTCAGCTGTGGGCGTGCCGCGACGGC
GACACAGGGACGGTGGCCCGTATCTCCGATGCCGACCCGCAGATGCTGCGATACTTTGCCAGCATCGGGATCAGCCTGGA
CTCGCGGCTGCGGGTGCTGGCTCGGCGCGAGTTCGCCGGCATGATCTCGGTGGCAATCGACTCGGCCGACGGCGCCACCG
TCGACTTGGGGAGCCCGGCCGCCCAGGCAATCTGGGTGGTGAGCTGA

Upstream 100 bases:

>100_bases
GCGTCAGGTCGGATGACGGTTTGGTCGAGACCGAGTTGGCGGCCATTTCCCCGACTGCGCACCGAGCGCGCCGTCACGCC
GGTATCTAGACTCTCTGGTT

Downstream 100 bases:

>100_bases
CGGCTTTGGCCCGCGAGCGTAACGTGGCTGCGATTTTCGGCACGGATTTTCGCAGTCCGGTTACGCTCGCGAAGCCGGTT
CGCCCAGCAGGCCCTTGGCG

Product: transcriptional repressor sirR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MRADEEPGDLSAVAQDYLKVIWTAQEWSQDKVSTKMLAERIGVSASTASESIRKLAEQGLVDHEKYGAVTLTDSGRRAAL
AMVRRHRLLETFLVNELGYRWDEVHDEAEVLEHAVSDRLMARIDAKLGFPQRDPHGDPIPGADGQVPTPPARQLWACRDG
DTGTVARISDADPQMLRYFASIGISLDSRLRVLARREFAGMISVAIDSADGATVDLGSPAAQAIWVVS

Sequences:

>Translated_228_residues
MRADEEPGDLSAVAQDYLKVIWTAQEWSQDKVSTKMLAERIGVSASTASESIRKLAEQGLVDHEKYGAVTLTDSGRRAAL
AMVRRHRLLETFLVNELGYRWDEVHDEAEVLEHAVSDRLMARIDAKLGFPQRDPHGDPIPGADGQVPTPPARQLWACRDG
DTGTVARISDADPQMLRYFASIGISLDSRLRVLARREFAGMISVAIDSADGATVDLGSPAAQAIWVVS
>Mature_228_residues
MRADEEPGDLSAVAQDYLKVIWTAQEWSQDKVSTKMLAERIGVSASTASESIRKLAEQGLVDHEKYGAVTLTDSGRRAAL
AMVRRHRLLETFLVNELGYRWDEVHDEAEVLEHAVSDRLMARIDAKLGFPQRDPHGDPIPGADGQVPTPPARQLWACRDG
DTGTVARISDADPQMLRYFASIGISLDSRLRVLARREFAGMISVAIDSADGATVDLGSPAAQAIWVVS

Specific function: Metal-dependent DNA-binding protein that controls transcription of many genes involved in iron metabolism [H]

COG id: COG1321

COG function: function code K; Mn-dependent transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH dtxR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007167
- InterPro:   IPR001367
- InterPro:   IPR022689
- InterPro:   IPR022687
- InterPro:   IPR008988
- InterPro:   IPR011991 [H]

Pfam domain/function: PF02742 Fe_dep_repr_C; PF01325 Fe_dep_repress; PF04023 FeoA [H]

EC number: NA

Molecular weight: Translated: 24951; Mature: 24951

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: PS50944 HTH_DTXR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRADEEPGDLSAVAQDYLKVIWTAQEWSQDKVSTKMLAERIGVSASTASESIRKLAEQGL
CCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
VDHEKYGAVTLTDSGRRAALAMVRRHRLLETFLVNELGYRWDEVHDEAEVLEHAVSDRLM
CCCHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHH
ARIDAKLGFPQRDPHGDPIPGADGQVPTPPARQLWACRDGDTGTVARISDADPQMLRYFA
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCCCCCCEEEECCCCHHHHHHHH
SIGISLDSRLRVLARREFAGMISVAIDSADGATVDLGSPAAQAIWVVS
HHCCCHHHHHHHHHHHHHHHEEHEEEECCCCCEEECCCCCCCEEEEEC
>Mature Secondary Structure
MRADEEPGDLSAVAQDYLKVIWTAQEWSQDKVSTKMLAERIGVSASTASESIRKLAEQGL
CCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
VDHEKYGAVTLTDSGRRAALAMVRRHRLLETFLVNELGYRWDEVHDEAEVLEHAVSDRLM
CCCHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHH
ARIDAKLGFPQRDPHGDPIPGADGQVPTPPARQLWACRDGDTGTVARISDADPQMLRYFA
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCCCCCCEEEECCCCHHHHHHHH
SIGISLDSRLRVLARREFAGMISVAIDSADGATVDLGSPAAQAIWVVS
HHCCCHHHHHHHHHHHHHHHEEHEEEECCCCCEEECCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]