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The map label for this gene is xerC [H]

Identifier: 148823839

GI number: 148823839

Start: 2983868

End: 2984866

Strand: Direct

Name: xerC [H]

Synonym: TBFG_12664

Alternate gene names: 148823839

Gene position: 2983868-2984866 (Clockwise)

Preceding gene: 148823838

Following gene: 148823840

Centisome position: 67.44

GC content: 67.47

Gene sequence:

>999_bases
GTGAACACCGCGACCCGGGTCCGGCTGGCCCGCAAACGCGCCGACCGGCTCAATCTGAAACTAATCAAGAACGGCCACCA
CTTCAGGTTGCGTGACGCCGACGAGATCACGCTGGCGGTCGGGCACCTAGGGGTGGTGGAAGCCTTCCTGGCGGCGGCCA
AGTCGCAAAACAAGCCGCCCGGTCCGCCGCCGAGCCTCCACGCCCCGCCATCCTGGCGGCGCGACATCGACGACTACCTG
CTCAACCTGAACGCCGCCGGTCAACGCCCAGCGACGATCCGGCTACGCAAGACGGTGCTGTGCGCAGCCGCCCACGGCCT
CGGCCGCCCACCCGCCGACGTCACCGCCGAACACCTCCTGGACTGGCTAGGCAAACAGCAGCACCTCTCCCCAGAGGGCC
GCAAAACCTATCGCAGCACGTTGCGGGGCTTCTTCGTGTGGGCCTACGAAATGGACCGGGTGCGCGACTATGTCGCAGAC
TCCCTGCCTAAGGTGCGCTGCCCGAAACAGCCGCCCCGCCCGGCCGGCGACGACGTCTGGCAAGCGGCGCTGGCCAAGGC
CGACCGTCGAATCGAGCTGATGATCCGCCTAGCCGGTGAGGCCGGGCTGCGACGCGCCGAAGCCGCCCAGGCGCACACCG
GCGACTTGATGGACGGCGGGCTTCTCCTCGTTCACGGCAAAGGTGGTAAACGCCGTATTGTGCCGATCAGCGACTACTTG
GCCGCGCTCATCCGCGACACCCCGCACGGCTACCTGTTCCCCAACGGCACCGGCGGCCACCTCACCGCCGAACACGTGGG
AAAACTCGTCTCCCGGGCATTACCCGGTGACGCGACCATGCACACCCTGCGGCACCGATACGCCACCCGCGCCTACCGCG
GCTCCCACAACTTGCGAGCTGTACAACAACTTCTCGGTCACGCCTCGATCGTGACAACAGAACGCTACACAGCGCTGTGC
GACGACGAGGTGCGCGCCGCAGCAGCAGCCGCATGGTGA

Upstream 100 bases:

>100_bases
GCCCGGCGGCGGCCCGCCGGCTGGCCGCTGAGCTGCTCAACGCCGCCGACACCCTCGACGACGGCCGCCGGCAGCTAGAC
GACCTCGGCGAACACCGGCG

Downstream 100 bases:

>100_bases
GTCGCCCTGGCGTTTGCTGCAGCCGATCGGCGTCACCCCCGACAGGCGGCTCGTATTCGGCCAGCGGCGGCTCGAGGCTG
CACGGCTGCTCGGATGGGAG

Product: integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 332

Protein sequence:

>332_residues
MNTATRVRLARKRADRLNLKLIKNGHHFRLRDADEITLAVGHLGVVEAFLAAAKSQNKPPGPPPSLHAPPSWRRDIDDYL
LNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLLDWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVAD
SLPKVRCPKQPPRPAGDDVWQAALAKADRRIELMIRLAGEAGLRRAEAAQAHTGDLMDGGLLLVHGKGGKRRIVPISDYL
AALIRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYTALC
DDEVRAAAAAAW

Sequences:

>Translated_332_residues
MNTATRVRLARKRADRLNLKLIKNGHHFRLRDADEITLAVGHLGVVEAFLAAAKSQNKPPGPPPSLHAPPSWRRDIDDYL
LNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLLDWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVAD
SLPKVRCPKQPPRPAGDDVWQAALAKADRRIELMIRLAGEAGLRRAEAAQAHTGDLMDGGLLLVHGKGGKRRIVPISDYL
AALIRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYTALC
DDEVRAAAAAAW
>Mature_332_residues
MNTATRVRLARKRADRLNLKLIKNGHHFRLRDADEITLAVGHLGVVEAFLAAAKSQNKPPGPPPSLHAPPSWRRDIDDYL
LNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLLDWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVAD
SLPKVRCPKQPPRPAGDDVWQAALAKADRRIELMIRLAGEAGLRRAEAAQAHTGDLMDGGLLLVHGKGGKRRIVPISDYL
AALIRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYTALC
DDEVRAAAAAAW

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=275, Percent_Identity=28.3636363636364, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 36590; Mature: 36590

Theoretical pI: Translated: 10.71; Mature: 10.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTATRVRLARKRADRLNLKLIKNGHHFRLRDADEITLAVGHLGVVEAFLAAAKSQNKPP
CCCHHHHHHHHHHHHHCCEEEEECCCEEEECCCCCEEEEHHHHHHHHHHHHHHHCCCCCC
GPPPSLHAPPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLL
CCCCCCCCCCCHHHCHHHHHEECCCCCCCCCEEHHHHHHHHHHHHCCCCCCHHHHHHHHH
DWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVW
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
QAALAKADRRIELMIRLAGEAGLRRAEAAQAHTGDLMDGGLLLVHGKGGKRRIVPISDYL
HHHHHHCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEEEHHHHH
AALIRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAYRGSHNLRA
HHHHHCCCCCEECCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHH
VQQLLGHASIVTTERYTALCDDEVRAAAAAAW
HHHHHCCHHEEECHHHHHHCCHHHHHHHHCCC
>Mature Secondary Structure
MNTATRVRLARKRADRLNLKLIKNGHHFRLRDADEITLAVGHLGVVEAFLAAAKSQNKPP
CCCHHHHHHHHHHHHHCCEEEEECCCEEEECCCCCEEEEHHHHHHHHHHHHHHHCCCCCC
GPPPSLHAPPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLL
CCCCCCCCCCCHHHCHHHHHEECCCCCCCCCEEHHHHHHHHHHHHCCCCCCHHHHHHHHH
DWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVW
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
QAALAKADRRIELMIRLAGEAGLRRAEAAQAHTGDLMDGGLLLVHGKGGKRRIVPISDYL
HHHHHHCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEEEHHHHH
AALIRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAYRGSHNLRA
HHHHHCCCCCEECCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHH
VQQLLGHASIVTTERYTALCDDEVRAAAAAAW
HHHHHCCHHEEECHHHHHHCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA