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The map label for this gene is ynfA [C]

Identifier: 148823832

GI number: 148823832

Start: 2978343

End: 2978675

Strand: Reverse

Name: ynfA [C]

Synonym: TBFG_12657

Alternate gene names: 148823832

Gene position: 2978675-2978343 (Counterclockwise)

Preceding gene: 148823833

Following gene: 148823828

Centisome position: 67.32

GC content: 66.07

Gene sequence:

>333_bases
ATGGTGGTGCGGTCAATCCTGCTATTCGTCCTGGCGGCGGTTGCGGAGATCGGTGGCGCGTGGCTGGTATGGCAGGGCGT
CCGCGAGCAACGGGGTTGGCTTTGGGCGGGACTCGGAGTTATTGCGCTTGGGGTCTATGGGTTCTTCGCCACATTGCAGC
CGGACGCCCATTTCGGTCGGGTCTTGGCCGCCTACGGTGGTGTGTTTGTCGCCGGTTCGCTCGCCTGGGGCATGGCCCTG
GACGGGTTCCGGCCCGACCGGTGGGATGTCATCGGTGCCCTTGGCTGCATGGCCGGGGTAGCCGTGATCATGTACGCCCC
TCGCGGCCACTGA

Upstream 100 bases:

>100_bases
GCCAACACCGGTGTCTGGCTGAGCGCGGGTGACGGGAAGCATTTGGGGTGCGCGATTGGTTGGGGGGCGGCAGGGCAGCG
GATCTCGTAGGCTCGCAACC

Downstream 100 bases:

>100_bases
CTGCTGCGGCGCGCCCGACTTGATCGCGACCTGCATCGTGGATGTCCGAAGTGGATTACCTTGCAAGGCAAGCGATACCG
CATGCGCGCCTGACGCGAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 110; Mature: 110

Protein sequence:

>110_residues
MVVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGRVLAAYGGVFVAGSLAWGMAL
DGFRPDRWDVIGALGCMAGVAVIMYAPRGH

Sequences:

>Translated_110_residues
MVVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGRVLAAYGGVFVAGSLAWGMAL
DGFRPDRWDVIGALGCMAGVAVIMYAPRGH
>Mature_110_residues
MVVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGRVLAAYGGVFVAGSLAWGMAL
DGFRPDRWDVIGALGCMAGVAVIMYAPRGH

Specific function: Unknown

COG id: COG1742

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0060 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2639_MYCTU (P67146)

Other databases:

- EMBL:   BX842580
- EMBL:   AE000516
- PIR:   C70964
- RefSeq:   NP_217155.1
- RefSeq:   NP_337217.1
- ProteinModelPortal:   P67146
- EnsemblBacteria:   EBMYCT00000002611
- EnsemblBacteria:   EBMYCT00000069830
- GeneID:   887428
- GeneID:   925535
- GenomeReviews:   AE000516_GR
- GenomeReviews:   AL123456_GR
- KEGG:   mtc:MT2717
- KEGG:   mtu:Rv2639c
- TIGR:   MT2717
- TubercuList:   Rv2639c
- GeneTree:   EBGT00050000017676
- HOGENOM:   HBG313568
- OMA:   TRWDVAG
- ProtClustDB:   PRK02237
- HAMAP:   MF_00010
- InterPro:   IPR003844

Pfam domain/function: PF02694 UPF0060

EC number: NA

Molecular weight: Translated: 11720; Mature: 11720

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1c59c87c)-; HASH(0x1c902318)-; HASH(0x1c6c5794)-; HASH(0x19fcb39c)-;

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGR
CHHHHHHHHHHHHHHHHCCHHEEEHHHHHHCCEEHHHHHHHHHHHHHHHHHCCCCHHHHH
VLAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPRGH
HHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
>Mature Secondary Structure
MVVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGR
CHHHHHHHHHHHHHHHHCCHHEEEHHHHHHCCEEHHHHHHHHHHHHHHHHHCCCCHHHHH
VLAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPRGH
HHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036