Click here to switch to the map view.

The map label for this gene is 148823773

Identifier: 148823773

GI number: 148823773

Start: 2915826

End: 2916848

Strand: Reverse

Name: 148823773

Synonym: TBFG_12598

Alternate gene names: NA

Gene position: 2916848-2915826 (Counterclockwise)

Preceding gene: 148823775

Following gene: 148823771

Centisome position: 65.93

GC content: 67.84

Gene sequence:

>1023_bases
ATGCGTTGGGCCCGGCAAGCCGTCGCGGTGAACGGGATGCCCGTTGACGACGGGGCGCTGCCGGGGTTGCAGCGGATCGG
CCTGGTCCGCAGCGTTCGCGCGCCACAATTCGACGGCATCACCTTCCACGAGGTGTTGTGCAAATCAGCGCTGAACAAGG
TGCCCAACGCGGCCGCGTTGCCGTTTCGCTACACCGTCAACGGCTACCGCGGCTGCTCGCATGCTTGTCGCTATTGTTTC
GCCCGCCCCACCCACGAGTACCTGGACTTCAATCCGGGCACCGACTTCGACACCCAGGTGGTGGTCAAGACCAACGTCGC
CGCTGTGCTGCGTCACGAGTTGCGCCGGCCGTCCTGGCGGCGCGAGACCGTCGCGTTGGGCACCAACACCGACCCCTACC
AGCGCGCGGAGGGCCGCTACGCCCTGATGCCGGGCATCATCGGCGCGCTGGCGGCATCCGGTACGCCGCTGTCGATCCTG
ACCAAGGGCACCCTGCTGCGACGGGACTTGCCGTTGATCGCCGAGGCCGCCCAACAAGTGCCGGTGTCGGTGGCGGTGTC
GCTGGCCGTTGGCGACCCGGAGCTGCACCGGGATGTCGAGTCGGGTACGCCAACACCGCAGGCGCGGCTGGCGCTCATTA
CCGCAATTCGCGCCGCCGGCTTGGACTGTCACGTGATGGTCGCGCCGGTGCTGCCACAACTCACCGACTCCGGCGAGCAC
CTTGACCAACTGTTGGGCCAGATCGCGGCCGCAGGCGCCACCGGTGTAACGGTCTTTGGCCTGCATCTGCGGGGTTCGAC
GCGCGGCTGGTTCATGTGCTGGCTGGCCCGCGCGCATCCCGAACTGGTCAGCCGGTACCGCGAACTGTACCGGCGCGGGC
CATATCTACCGCCGAGCTACCGCGAGATGCTGCGGGAACGGGTGGCACCGCTGATCGCAAAGTATCGGTTGGCGGGTGAT
CATCGCCCGGCGCCGCCGGAGACCGAAGCGGCACTGGTACCCGTTCAGGCGACCCTGTTCTGA

Upstream 100 bases:

>100_bases
GGCTCCTGTCTGTGCGGGCAGAGATGGCATATCACATCCTGTGCGGCGCTCGGTAGCGGCCAGCGTTGACAAAGTATAGA
ACGGTTGTTCGAATAATGGT

Downstream 100 bases:

>100_bases
GCTATCCGCCGCGCGGCTTGGTCAAGGTGAATTGGTCGATGACGGTGAGTCCCCCGAACGGCCCAGTCACCGCGTAATAC
GTCGCCTTGATCGAGGTAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAALPFRYTVNGYRGCSHACRYCF
ARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWRRETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSIL
TKGTLLRRDLPLIAEAAQQVPVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH
LDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSYREMLRERVAPLIAKYRLAGD
HRPAPPETEAALVPVQATLF

Sequences:

>Translated_340_residues
MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAALPFRYTVNGYRGCSHACRYCF
ARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWRRETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSIL
TKGTLLRRDLPLIAEAAQQVPVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH
LDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSYREMLRERVAPLIAKYRLAGD
HRPAPPETEAALVPVQATLF
>Mature_340_residues
MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAALPFRYTVNGYRGCSHACRYCF
ARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWRRETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSIL
TKGTLLRRDLPLIAEAAQQVPVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH
LDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSYREMLRERVAPLIAKYRLAGD
HRPAPPETEAALVPVQATLF

Specific function: Unknown

COG id: COG1533

COG function: function code L; DNA repair photolyase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2578_MYCTU (P65023)

Other databases:

- EMBL:   BX842580
- EMBL:   AE000516
- PIR:   A70725
- RefSeq:   NP_217094.1
- RefSeq:   NP_337154.1
- ProteinModelPortal:   P65023
- EnsemblBacteria:   EBMYCT00000002104
- EnsemblBacteria:   EBMYCT00000071021
- GeneID:   887427
- GeneID:   925658
- GenomeReviews:   AE000516_GR
- GenomeReviews:   AL123456_GR
- KEGG:   mtc:MT2655
- KEGG:   mtu:Rv2578c
- TIGR:   MT2655
- TubercuList:   Rv2578c
- GeneTree:   EBGT00050000016630
- HOGENOM:   HBG726641
- OMA:   FEGITFH
- ProtClustDB:   CLSK872077
- InterPro:   IPR013785
- InterPro:   IPR006638
- InterPro:   IPR007197
- Gene3D:   G3DSA:3.20.20.70
- SMART:   SM00729

Pfam domain/function: PF04055 Radical_SAM

EC number: NA

Molecular weight: Translated: 37176; Mature: 37176

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1c049d9c)-; HASH(0x1bcfc464)-;

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAAL
CCCHHHHHEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
PFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWR
CEEEECCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCC
RETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQV
CCEEEECCCCCHHHHCCCCEEEHHHHHHHHHCCCCCCEEEECCHHHHCCCHHHHHHHHHC
PVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH
CEEEEEEEEECCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHHHCCCHHH
LDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSY
HHHHHHHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCHHH
REMLRERVAPLIAKYRLAGDHRPAPPETEAALVPVQATLF
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECH
>Mature Secondary Structure
MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAAL
CCCHHHHHEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
PFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWR
CEEEECCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCC
RETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQV
CCEEEECCCCCHHHHCCCCEEEHHHHHHHHHCCCCCCEEEECCHHHHCCCHHHHHHHHHC
PVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH
CEEEEEEEEECCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHHHCCCHHH
LDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSY
HHHHHHHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCHHH
REMLRERVAPLIAKYRLAGDHRPAPPETEAALVPVQATLF
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036