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The map label for this gene is yqgF [C]

Identifier: 148823750

GI number: 148823750

Start: 2886576

End: 2887088

Strand: Reverse

Name: yqgF [C]

Synonym: TBFG_12575

Alternate gene names: 148823750

Gene position: 2887088-2886576 (Counterclockwise)

Preceding gene: 148823751

Following gene: 148823749

Centisome position: 65.25

GC content: 70.96

Gene sequence:

>513_bases
GTGGTCCCAGCACAGCACCGCCCGCCCGACCGGCCCGGCGATCCAGCGCACGACCCTGGACGGGGACGACGCCTCGGTAT
CGACGTGGGCGCCGCGCGTATCGGCGTGGCTTGCAGCGACCCGGACGCGATCTTGGCCACCCCGGTGGAAACGGTGCGCC
GCGATCGTTCCGGCAAGCACCTGCGCAGGCTGGCTGCGCTGGCCGCCGAGTTGGAGGCGGTCGAGGTGATCGTCGGGCTC
CCGCGCACGCTGGCCGACCGCATCGGCCGCTCGGCCCAAGACGCAATCGAACTGGCCGAGGCGCTGGCACGCCGTGTTTC
TCCTACGCCGGTGCGGCTGGCCGACGAGCGGCTCACCACGGTCAGTGCTCAACGATCTTTGCGGCAGGCGGGGGTGCGGG
CCTCCGAGCAGCGTGCGGTGATCGACCAAGCGGCCGCAGTGGCAATACTGCAGAGCTGGCTGGATGAACGTCTCGCGGCG
ATGGCCGGGACTCAAGAAGGCTCCGATGCCTGA

Upstream 100 bases:

>100_bases
GGCGGACCTGGCGCAGGGCTCGGGAAAGAATCCGACCGGTATCGACGCCGCGCTCGACGCGGTCCGCTCCGAGATCGCCG
TGATAGCGCGGGTCGGTTGA

Downstream 100 bases:

>100_bases
CGGTGGCCACCGCCACCGCGCCCAGCCGGTGTCGGTAAGACCGAACCGGCACCGCAGGACCCGAGTCAGCCGCGCTCAGC
GCCGACACGCCCAACAAATC

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MVPAQHRPPDRPGDPAHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETVRRDRSGKHLRRLAALAAELEAVEVIVGL
PRTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLTTVSAQRSLRQAGVRASEQRAVIDQAAAVAILQSWLDERLAA
MAGTQEGSDA

Sequences:

>Translated_170_residues
MVPAQHRPPDRPGDPAHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETVRRDRSGKHLRRLAALAAELEAVEVIVGL
PRTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLTTVSAQRSLRQAGVRASEQRAVIDQAAAVAILQSWLDERLAA
MAGTQEGSDA
>Mature_170_residues
MVPAQHRPPDRPGDPAHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETVRRDRSGKHLRRLAALAAELEAVEVIVGL
PRTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLTTVSAQRSLRQAGVRASEQRAVIDQAAAVAILQSWLDERLAA
MAGTQEGSDA

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_MYCBO (P67488)

Other databases:

- EMBL:   BX248343
- RefSeq:   NP_856230.1
- ProteinModelPortal:   P67488
- SMR:   P67488
- EnsemblBacteria:   EBMYCT00000016143
- GeneID:   1092065
- GenomeReviews:   BX248333_GR
- KEGG:   mbo:Mb2584c
- GeneTree:   EBGT00050000017543
- HOGENOM:   HBG607919
- OMA:   VLILQNY
- ProtClustDB:   PRK00109
- BioCyc:   MBOV233413:MB2584C-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 18066; Mature: 18066

Theoretical pI: Translated: 8.57; Mature: 8.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVPAQHRPPDRPGDPAHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETVRRDRSGKH
CCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHCEEECCCCCEEECCHHHHHCCCCHHH
LRRLAALAAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLTT
HHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
VSAQRSLRQAGVRASEQRAVIDQAAAVAILQSWLDERLAAMAGTQEGSDA
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MVPAQHRPPDRPGDPAHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETVRRDRSGKH
CCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHCEEECCCCCEEECCHHHHHCCCCHHH
LRRLAALAAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLTT
HHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
VSAQRSLRQAGVRASEQRAVIDQAAAVAILQSWLDERLAAMAGTQEGSDA
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972