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The map label for this gene is 148823458

Identifier: 148823458

GI number: 148823458

Start: 2536934

End: 2537503

Strand: Reverse

Name: 148823458

Synonym: TBFG_12279

Alternate gene names: NA

Gene position: 2537503-2536934 (Counterclockwise)

Preceding gene: 148823462

Following gene: 148823457

Centisome position: 57.35

GC content: 65.96

Gene sequence:

>570_bases
ATGCTGTCAATGAGTAATGACCGCGCGGATACCGGTGGTCGTATCCTGCGGGCAGCGGCGAGCTGCGTCGTCGATTACGG
CGTGGACCGGGTGACACTTGCCGAGATCGCCCGGCGCGCGGGCGTGAGCCGCCCGACCGTATACCGTCGCTGGCCGGACA
CCCGGTCGATCATGGCGTCCATGCTGACCAGCCATATCGCCGACGTGCTGCGGGAGGTGCCCCTCGACGGGGACGACCGG
GAAGCGTTGGTAAAGCAGATTGTCGCGGTGGCCGACCGGTTGCGGGGTGACGATCTGATCATGTCGGTCATGCACTCGGA
GCTGGCCAGGGTGTACATCACCGAGCGCCTCGGCGCCAGCCAGCAGGTCCTGATCGAGGGGTTGGCCGCCCGGCTGACAG
TGGCGCAGCGGTCGGGCAGTGTGCGCTCCGGCGACGCTCGTCGACTGGCGACCATGGTGTTGCTGATCGCCCAGTCGACC
ATCCAGTCCGCGGACATCGTCGATTCGATCCTCGATTCCGCCGCGCTGGCCACCGAACTTACCCACGCACTGAACGGATA
TTTGTGCTGA

Upstream 100 bases:

>100_bases
CCATCAGAAAGTGGCTTGGCCGCGGCGGGATCTCCCCACGCGTCCCATTTCATCGGTGGAAGGAGTTCCTCGCGGTGAGT
CACGCGTTACAGTATTACAC

Downstream 100 bases:

>100_bases
TGCCCCACTCGGCTGCACTCAACGCGGCGCGTCGCTCCGCCGACCTGACCGCACTGGCCGACGGTGGCGCACTCGACGTC
ATCGTGATAGGCGGCGGCAT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MLSMSNDRADTGGRILRAAASCVVDYGVDRVTLAEIARRAGVSRPTVYRRWPDTRSIMASMLTSHIADVLREVPLDGDDR
EALVKQIVAVADRLRGDDLIMSVMHSELARVYITERLGASQQVLIEGLAARLTVAQRSGSVRSGDARRLATMVLLIAQST
IQSADIVDSILDSAALATELTHALNGYLC

Sequences:

>Translated_189_residues
MLSMSNDRADTGGRILRAAASCVVDYGVDRVTLAEIARRAGVSRPTVYRRWPDTRSIMASMLTSHIADVLREVPLDGDDR
EALVKQIVAVADRLRGDDLIMSVMHSELARVYITERLGASQQVLIEGLAARLTVAQRSGSVRSGDARRLATMVLLIAQST
IQSADIVDSILDSAALATELTHALNGYLC
>Mature_189_residues
MLSMSNDRADTGGRILRAAASCVVDYGVDRVTLAEIARRAGVSRPTVYRRWPDTRSIMASMLTSHIADVLREVPLDGDDR
EALVKQIVAVADRLRGDDLIMSVMHSELARVYITERLGASQQVLIEGLAARLTVAQRSGSVRSGDARRLATMVLLIAQST
IQSADIVDSILDSAALATELTHALNGYLC

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 20464; Mature: 20464

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSMSNDRADTGGRILRAAASCVVDYGVDRVTLAEIARRAGVSRPTVYRRWPDTRSIMAS
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
MLTSHIADVLREVPLDGDDREALVKQIVAVADRLRGDDLIMSVMHSELARVYITERLGAS
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCH
QQVLIEGLAARLTVAQRSGSVRSGDARRLATMVLLIAQSTIQSADIVDSILDSAALATEL
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
THALNGYLC
HHHHHCCCC
>Mature Secondary Structure
MLSMSNDRADTGGRILRAAASCVVDYGVDRVTLAEIARRAGVSRPTVYRRWPDTRSIMAS
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
MLTSHIADVLREVPLDGDDREALVKQIVAVADRLRGDDLIMSVMHSELARVYITERLGAS
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCH
QQVLIEGLAARLTVAQRSGSVRSGDARRLATMVLLIAQSTIQSADIVDSILDSAALATEL
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
THALNGYLC
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]