Click here to switch to the map view.

The map label for this gene is yibD [C]

Identifier: 148822741

GI number: 148822741

Start: 1712166

End: 1713176

Strand: Reverse

Name: yibD [C]

Synonym: TBFG_11550

Alternate gene names: 148822741

Gene position: 1713176-1712166 (Counterclockwise)

Preceding gene: 148822746

Following gene: 148822740

Centisome position: 38.72

GC content: 66.37

Gene sequence:

>1011_bases
GTGAGTCCCCAGCTTTGCCCCAAGGTGAGCATCGTCTCGACCACTCACAACCAGGCGGGCTACGCCCGTCAGGCCTTCGA
CAGCTTTCTCGACCAGCAAACCGACTTCCCGGTGGAGATCATCGTCGCCGACGACGCGTCGACCGATGCCACCCCGGCGA
TCATCCGTGAGTACGCCGAGCGGTACCCGCACGTGTTCCGGCCGATCTTCAGGACCGAAAACCTCGGCCTCAATGGGAAC
CTGACCGGCGCCCTGTCGGCCGCTCGCGGCGAGTACGTCGCGTTGTGCGAGGCGGACGACTACTGGATCGATCCGCTGAA
GCTAAGCAAACAGGTCGCATTCCTCGACCGGCACCCCAAGACGACGGTGTGCTTCCATCCCGTCCGAGTGATATGGGAGG
ACGGCCATGCCAAGGACTCGAAGTTCCCCCCGGTTCGGGTGCGGGGCAACTTGAGCCTGGATGCGTTGATCTTGATGAAC
TTCATCCAGACCAACTCGGCCGTGTACCGTCGCCTCGAGCGCTACGACGACATTCCTGCCGACGTCATGCCCCTGGACTG
GTATCTGCACGTCCGGCACGCGGTGCATGGCGACATCGCCATGTTGCCCGACACCATGGCCGTGTATCGCCGCCACGCCC
AAGGCATGTGGCACAACCAGGTGGTGGACCCGCCAAAGTTCTGGTTGACGCAGGGTCCGGGGCATGCGGCGACGTTTGAC
GCGATGCTCGACCTGTTCCCGGGAGACCCCGCGCGCGAGGAGCTCATCGCCGTCATGGCCGACTGGATCCTTCGCCAGAT
CGCCAACGTTCCAGGCCCGGAGGGGCGCGCCGCGCTGCAGGAAACCATCGCGCGCCATCCCCGGATCGCCATGCTGGCGC
TGCAGCACCGCGGGGCGACACCCGCGCGGCGGCTCAAGACCCAGTGGCGCAAGCTCGCCGCCGCGACGCCGAGCCGCAGG
GGGCTCGTGGATGTGTGGCCCTCCCGGCTCCGACGCGGCTGTCGAGCCTGA

Upstream 100 bases:

>100_bases
CCGCCGACCACCAGGCCACGACGGCCGACGGCCGGCGGGCACAGGCGATTCACGTTCGCCATCGCAATACCCTTGCGGCC
GCGCAGGAAAAGGGCCGACG

Downstream 100 bases:

>100_bases
CCATGTCGACAAACCCAGGACCAGCCGAAGGGGCTAACCAAGTGATGGCACAGGAACATTCGGCCGGCGCGGTACAATTC
ACCGCCCACAACGTTCGCCT

Product: sugar transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 335

Protein sequence:

>336_residues
MSPQLCPKVSIVSTTHNQAGYARQAFDSFLDQQTDFPVEIIVADDASTDATPAIIREYAERYPHVFRPIFRTENLGLNGN
LTGALSAARGEYVALCEADDYWIDPLKLSKQVAFLDRHPKTTVCFHPVRVIWEDGHAKDSKFPPVRVRGNLSLDALILMN
FIQTNSAVYRRLERYDDIPADVMPLDWYLHVRHAVHGDIAMLPDTMAVYRRHAQGMWHNQVVDPPKFWLTQGPGHAATFD
AMLDLFPGDPAREELIAVMADWILRQIANVPGPEGRAALQETIARHPRIAMLALQHRGATPARRLKTQWRKLAAATPSRR
GLVDVWPSRLRRGCRA

Sequences:

>Translated_336_residues
MSPQLCPKVSIVSTTHNQAGYARQAFDSFLDQQTDFPVEIIVADDASTDATPAIIREYAERYPHVFRPIFRTENLGLNGN
LTGALSAARGEYVALCEADDYWIDPLKLSKQVAFLDRHPKTTVCFHPVRVIWEDGHAKDSKFPPVRVRGNLSLDALILMN
FIQTNSAVYRRLERYDDIPADVMPLDWYLHVRHAVHGDIAMLPDTMAVYRRHAQGMWHNQVVDPPKFWLTQGPGHAATFD
AMLDLFPGDPAREELIAVMADWILRQIANVPGPEGRAALQETIARHPRIAMLALQHRGATPARRLKTQWRKLAAATPSRR
GLVDVWPSRLRRGCRA
>Mature_335_residues
SPQLCPKVSIVSTTHNQAGYARQAFDSFLDQQTDFPVEIIVADDASTDATPAIIREYAERYPHVFRPIFRTENLGLNGNL
TGALSAARGEYVALCEADDYWIDPLKLSKQVAFLDRHPKTTVCFHPVRVIWEDGHAKDSKFPPVRVRGNLSLDALILMNF
IQTNSAVYRRLERYDDIPADVMPLDWYLHVRHAVHGDIAMLPDTMAVYRRHAQGMWHNQVVDPPKFWLTQGPGHAATFDA
MLDLFPGDPAREELIAVMADWILRQIANVPGPEGRAALQETIARHPRIAMLALQHRGATPARRLKTQWRKLAAATPSRRG
LVDVWPSRLRRGCRA

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 37965; Mature: 37834

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPQLCPKVSIVSTTHNQAGYARQAFDSFLDQQTDFPVEIIVADDASTDATPAIIREYAE
CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHH
RYPHVFRPIFRTENLGLNGNLTGALSAARGEYVALCEADDYWIDPLKLSKQVAFLDRHPK
HCCHHHHHHHHCCCCCCCCCCHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCC
TTVCFHPVRVIWEDGHAKDSKFPPVRVRGNLSLDALILMNFIQTNSAVYRRLERYDDIPA
CEEEECCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCC
DVMPLDWYLHVRHAVHGDIAMLPDTMAVYRRHAQGMWHNQVVDPPKFWLTQGPGHAATFD
CCCCHHHHHHHHHHHCCCHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHEECCCCCHHHHH
AMLDLFPGDPAREELIAVMADWILRQIANVPGPEGRAALQETIARHPRIAMLALQHRGAT
HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEEEHHCCCC
PARRLKTQWRKLAAATPSRRGLVDVWPSRLRRGCRA
HHHHHHHHHHHHHHCCCCCCCCHHHCHHHHHHHCCC
>Mature Secondary Structure 
SPQLCPKVSIVSTTHNQAGYARQAFDSFLDQQTDFPVEIIVADDASTDATPAIIREYAE
CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHH
RYPHVFRPIFRTENLGLNGNLTGALSAARGEYVALCEADDYWIDPLKLSKQVAFLDRHPK
HCCHHHHHHHHCCCCCCCCCCHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCC
TTVCFHPVRVIWEDGHAKDSKFPPVRVRGNLSLDALILMNFIQTNSAVYRRLERYDDIPA
CEEEECCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCC
DVMPLDWYLHVRHAVHGDIAMLPDTMAVYRRHAQGMWHNQVVDPPKFWLTQGPGHAATFD
CCCCHHHHHHHHHHHCCCHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHEECCCCCHHHHH
AMLDLFPGDPAREELIAVMADWILRQIANVPGPEGRAALQETIARHPRIAMLALQHRGAT
HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEEEHHCCCC
PARRLKTQWRKLAAATPSRRGLVDVWPSRLRRGCRA
HHHHHHHHHHHHHHCCCCCCCCHHHCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]