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The map label for this gene is ybiH [C]

Identifier: 148822434

GI number: 148822434

Start: 1366488

End: 1367126

Strand: Reverse

Name: ybiH [C]

Synonym: TBFG_11243

Alternate gene names: 148822434

Gene position: 1367126-1366488 (Counterclockwise)

Preceding gene: 148822435

Following gene: 148822433

Centisome position: 30.9

GC content: 63.38

Gene sequence:

>639_bases
ATGCGTTCAGCCGATCTGACCGCGCACGCCAGGATCAGAGAGGCGGCCATCGAACAGTTCGGTCGGCACGGATTCGGTGT
CGGGCTGCGAGCCATCGCCGAAGCGGCGGGGGTGAGCGCGGCATTGGTCATCCACCATTTCGGTTCCAAGGAAGGTCTGC
GCAAGGCCTGCGACGACTTCGTCGCCGAAGAGATCCGCAGCAGCAAGGCTGCGGCACTGAAGTCCAACGACCCGACCACC
TGGCTCGCGCAGATGGCCGAGATCGAATCCTACGCACCGCTGATGGCATACCTGGTGCGCAGCATGCAATCCGGCGGCGA
GCTGGCGAAGATGCTGTGGCAGAAGATGATCGACAACGCCGAGGAGTACCTGGACGAAGGAGTACGCGCCGGTACGGTCA
AGCCCAGCCGCGACCCGCGCGCCCGTGCTCGGTTTCTGGCGATCACCGGAGGCGGAGGCTTCCTGCTTTATCTGCAAATG
CACGAAAACCCAACCGATCTCCGTGCAGCGTTACGCGACTACGCGCACGACATGGTGCTGCCTTCCCTGGAGGTCTACAC
CGAAGGCCTGCTGGCCGACCGCGCCATGTACGAGGCCTTCCTGGCCGAAGCTCAACAAGGAGAAGCACATGTCGGCTGA

Upstream 100 bases:

>100_bases
AGGGCGATTTTGCGTCTGCTCGGCAAAGTTCGCGGCCTTCACGGATTCCCAACGGCGCCCTCCCTTGACCGGGGATGAAC
GTACGTTTAATATCCTGAAC

Downstream 100 bases:

>100_bases
CAACCACCAGGTGCCCATCGAGATTCGCGGACTGACCAAGCACTTCGGGTCGGTGCGGGCGCTCGACGGGCTCGACCTCA
CGGTGCGCGAGGGCGAAGTG

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcriptional Regulatory Protein; HTH-Type Transcriptional Regulator; Regulatory Protein TetR; Tetr Family Transcriptional Regulator

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MRSADLTAHARIREAAIEQFGRHGFGVGLRAIAEAAGVSAALVIHHFGSKEGLRKACDDFVAEEIRSSKAAALKSNDPTT
WLAQMAEIESYAPLMAYLVRSMQSGGELAKMLWQKMIDNAEEYLDEGVRAGTVKPSRDPRARARFLAITGGGGFLLYLQM
HENPTDLRAALRDYAHDMVLPSLEVYTEGLLADRAMYEAFLAEAQQGEAHVG

Sequences:

>Translated_212_residues
MRSADLTAHARIREAAIEQFGRHGFGVGLRAIAEAAGVSAALVIHHFGSKEGLRKACDDFVAEEIRSSKAAALKSNDPTT
WLAQMAEIESYAPLMAYLVRSMQSGGELAKMLWQKMIDNAEEYLDEGVRAGTVKPSRDPRARARFLAITGGGGFLLYLQM
HENPTDLRAALRDYAHDMVLPSLEVYTEGLLADRAMYEAFLAEAQQGEAHVG
>Mature_212_residues
MRSADLTAHARIREAAIEQFGRHGFGVGLRAIAEAAGVSAALVIHHFGSKEGLRKACDDFVAEEIRSSKAAALKSNDPTT
WLAQMAEIESYAPLMAYLVRSMQSGGELAKMLWQKMIDNAEEYLDEGVRAGTVKPSRDPRARARFLAITGGGGFLLYLQM
HENPTDLRAALRDYAHDMVLPSLEVYTEGLLADRAMYEAFLAEAQQGEAHVG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23182; Mature: 23182

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSADLTAHARIREAAIEQFGRHGFGVGLRAIAEAAGVSAALVIHHFGSKEGLRKACDDF
CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHH
VAEEIRSSKAAALKSNDPTTWLAQMAEIESYAPLMAYLVRSMQSGGELAKMLWQKMIDNA
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
EEYLDEGVRAGTVKPSRDPRARARFLAITGGGGFLLYLQMHENPTDLRAALRDYAHDMVL
HHHHHCCCCCCCCCCCCCHHHHEEEEEEECCCCEEEEEEECCCHHHHHHHHHHHHHHHHC
PSLEVYTEGLLADRAMYEAFLAEAQQGEAHVG
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MRSADLTAHARIREAAIEQFGRHGFGVGLRAIAEAAGVSAALVIHHFGSKEGLRKACDDF
CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHH
VAEEIRSSKAAALKSNDPTTWLAQMAEIESYAPLMAYLVRSMQSGGELAKMLWQKMIDNA
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
EEYLDEGVRAGTVKPSRDPRARARFLAITGGGGFLLYLQMHENPTDLRAALRDYAHDMVL
HHHHHCCCCCCCCCCCCCHHHHEEEEEEECCCCEEEEEEECCCHHHHHHHHHHHHHHHHC
PSLEVYTEGLLADRAMYEAFLAEAQQGEAHVG
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA