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The map label for this gene is yqfA [C]

Identifier: 148822294

GI number: 148822294

Start: 1213526

End: 1214254

Strand: Reverse

Name: yqfA [C]

Synonym: TBFG_11103

Alternate gene names: 148822294

Gene position: 1214254-1213526 (Counterclockwise)

Preceding gene: 148822304

Following gene: 148822290

Centisome position: 27.44

GC content: 66.67

Gene sequence:

>729_bases
ATGAGCGGCCAGGCCGACACCGCCACCACCGCGGAAGCAAGGACGCCGGCCCACGCTGCCCACCACCTCGTCGAAGGTGT
CGCCCGTGTCCTGACCAAACCGCGCTTCCGCGGCTGGATCCACGTGTATTCCGCCGGCACCGCGGTGTTGGCCGGTGCGT
CGCTGGTCGCGGTGTCGTGGGCGGTGGGTTCCGCCAAGGCGGGCCTGACGACGCTGGCCTACACCGCGGCCACGATCACC
ATGTTCACCGTCAGCGCCACTTATCACCGGGTCAATTGGAAATCCGCGACGGCCCGCAACTGGATGAAGCGGGCCGACCA
CTCGATGATCTTCGTGTTCATCGCCGGCAGCTACACGCCGTTCGCGCTGCTGGCCTTGCCGGCCCACGACGGGCGCGTGG
TGTTGTCGATTGTTTGGGGCGGTGCGATCGCCGGAATCTTGCTGAAGATGTGTTGGCCGGCGGCGCCGCGCTCGGTCGGG
GTTCCGCTGTACCTGTTGCTGGGTTGGGTGGCGGTCTGGTACACCGCGACGATCCTGCACAACGCCGGGGTGACCGCGTT
GGTGTTGCTGTTTGTTGGCGGCGCGTTGTACAGCATCGGCGGCATTCTCTACGCGGTACGCTGGCCCGACCCGTGGCCGA
CGACGTTCGGCTACCACGAGTTCTTCCACGCCTGCACCGCGGTGGCGGCGATCTGCCACTACATCGCGATGTGGTTCGTG
GTGTTCTGA

Upstream 100 bases:

>100_bases
ACTACTGTGACCCAGACGTCGAGTCAGATGTCCGCTACCTGGCCCGACTACTGTGTTCGACGACACCCACCGGCAAGCAC
AAGACGAGGCAACAGGCGAA

Downstream 100 bases:

>100_bases
CCCGGCACGCCCAGGGCGGTCGCGAGCGTGAAAATTGCGACGCGACACGCCGACACCGCGTCGCGGATTTCACGGTGGAC
GGGTGCCACCCGAGTCCGCT

Product: hemolysin-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MSGQADTATTAEARTPAHAAHHLVEGVARVLTKPRFRGWIHVYSAGTAVLAGASLVAVSWAVGSAKAGLTTLAYTAATIT
MFTVSATYHRVNWKSATARNWMKRADHSMIFVFIAGSYTPFALLALPAHDGRVVLSIVWGGAIAGILLKMCWPAAPRSVG
VPLYLLLGWVAVWYTATILHNAGVTALVLLFVGGALYSIGGILYAVRWPDPWPTTFGYHEFFHACTAVAAICHYIAMWFV
VF

Sequences:

>Translated_242_residues
MSGQADTATTAEARTPAHAAHHLVEGVARVLTKPRFRGWIHVYSAGTAVLAGASLVAVSWAVGSAKAGLTTLAYTAATIT
MFTVSATYHRVNWKSATARNWMKRADHSMIFVFIAGSYTPFALLALPAHDGRVVLSIVWGGAIAGILLKMCWPAAPRSVG
VPLYLLLGWVAVWYTATILHNAGVTALVLLFVGGALYSIGGILYAVRWPDPWPTTFGYHEFFHACTAVAAICHYIAMWFV
VF
>Mature_241_residues
SGQADTATTAEARTPAHAAHHLVEGVARVLTKPRFRGWIHVYSAGTAVLAGASLVAVSWAVGSAKAGLTTLAYTAATITM
FTVSATYHRVNWKSATARNWMKRADHSMIFVFIAGSYTPFALLALPAHDGRVVLSIVWGGAIAGILLKMCWPAAPRSVGV
PLYLLLGWVAVWYTATILHNAGVTALVLLFVGGALYSIGGILYAVRWPDPWPTTFGYHEFFHACTAVAAICHYIAMWFVV
F

Specific function: Unknown

COG id: COG1272

COG function: function code R; Predicted membrane protein, hemolysin III homolog

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0073 (Hly-III) family

Homologues:

Organism=Escherichia coli, GI1789266, Length=170, Percent_Identity=30.5882352941176, Blast_Score=80, Evalue=9e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1085_MYCTU (P67157)

Other databases:

- EMBL:   BX842575
- EMBL:   AE000516
- PIR:   C70895
- RefSeq:   NP_215601.1
- RefSeq:   NP_335559.1
- EnsemblBacteria:   EBMYCT00000003104
- EnsemblBacteria:   EBMYCT00000071324
- GeneID:   887107
- GeneID:   925063
- GenomeReviews:   AE000516_GR
- GenomeReviews:   AL123456_GR
- KEGG:   mtc:MT1117
- KEGG:   mtu:Rv1085c
- TIGR:   MT1117
- TubercuList:   Rv1085c
- GeneTree:   EBGT00050000017459
- HOGENOM:   HBG717325
- OMA:   MIFLFIA
- ProtClustDB:   CLSK790941
- GO:   GO:0019835
- InterPro:   IPR004254
- InterPro:   IPR005744
- PANTHER:   PTHR20855
- PANTHER:   PTHR20855:SF3
- TIGRFAMs:   TIGR01065

Pfam domain/function: PF03006 HlyIII

EC number: NA

Molecular weight: Translated: 26035; Mature: 25903

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1969c6fc)-; HASH(0x181238e8)-; HASH(0x197e3674)-; HASH(0x19c79c1c)-; HASH(0x19c1143c)-; HASH(0x183871b8)-; HASH(0x1742d088)-;

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGQADTATTAEARTPAHAAHHLVEGVARVLTKPRFRGWIHVYSAGTAVLAGASLVAVSW
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHCCHHHHHHH
AVGSAKAGLTTLAYTAATITMFTVSATYHRVNWKSATARNWMKRADHSMIFVFIAGSYTP
HHCCCCCCHHHHHHHHHHHHHEEEEHHEEEECCCHHHHHHHHHHCCCCEEEEEEECCCCC
FALLALPAHDGRVVLSIVWGGAIAGILLKMCWPAAPRSVGVPLYLLLGWVAVWYTATILH
EEEEEEECCCCEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
NAGVTALVLLFVGGALYSIGGILYAVRWPDPWPTTFGYHEFFHACTAVAAICHYIAMWFV
CCCHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
VF
CH
>Mature Secondary Structure 
SGQADTATTAEARTPAHAAHHLVEGVARVLTKPRFRGWIHVYSAGTAVLAGASLVAVSW
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHCCHHHHHHH
AVGSAKAGLTTLAYTAATITMFTVSATYHRVNWKSATARNWMKRADHSMIFVFIAGSYTP
HHCCCCCCHHHHHHHHHHHHHEEEEHHEEEECCCHHHHHHHHHHCCCCEEEEEEECCCCC
FALLALPAHDGRVVLSIVWGGAIAGILLKMCWPAAPRSVGVPLYLLLGWVAVWYTATILH
EEEEEEECCCCEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
NAGVTALVLLFVGGALYSIGGILYAVRWPDPWPTTFGYHEFFHACTAVAAICHYIAMWFV
CCCHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
VF
CH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036