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The map label for this gene is ycdM [C]

Identifier: 148822162

GI number: 148822162

Start: 1067937

End: 1068809

Strand: Reverse

Name: ycdM [C]

Synonym: TBFG_10971

Alternate gene names: 148822162

Gene position: 1068809-1067937 (Counterclockwise)

Preceding gene: 148822171

Following gene: 148822159

Centisome position: 24.16

GC content: 65.98

Gene sequence:

>873_bases
GTGGAACACGTTCTAATTCGGTGCATGCACTACGGACTTGTGCTGTTCACCAGCGACCGCGGCATCACCCCGGCCGCGGC
CGCCAGACTTGCTGAAAGCCACGGGTTTCGCACGTTTTACGTGCCCGAACACACCCACATCCCGGTCAAGCGCCAGGCGG
CCCATCCGACGACGGGTGACGCTTCGCTGCCGGACGACCGCTATATGCGCACGTTGGACCCGTGGGTGAGCCTGGGAGCA
GCATCGGCGGTGACGTCGCGGATCCGGCTTGCCACCGCGGTGGCGCTGCCGGTCGAGCATGATCCGATCACGCTGGCGAA
AAGCATTGCGACGCTGGATCATTTGTCGCACGGCCGGGTCAGCGTCGGGGTCGGGTTCGGCTGGAACACCGACGAGCTCG
TCGATCATGGTGTGCCACCCGGACGCCGCCGCACCATGCTGCGCGAATACCTCGAGGCGATGCGGGCGTTGTGGACCCAA
GAGGAGGCCTGCTATGACGGCGAGTTCGTCAAGTTCGGACCTAGCTGGGCCTGGCCCAAGCCGGTGCAGCCGCACATCCC
GGTGCTGGTAGGCGCTGCGGGGACGGAGAAGAACTTCAAGTGGATCGCGCGCAGCGCCGACGGCTGGATCACCACTCCAC
GCGACGTCGACATCGACGAGCCGGTGAAGTTACTGCAAGACATCTGGGCGGCCGCCGGCCGCGACGGGCTTCCACAGATC
GTGGCCCTGGACGTCAAACCGGTGCCCGACAAGCTGGCGCGCTGGGCCGAGCTTGGCGTTACGGAGGTGCTGTTCGGTAT
GCCGGACAGGTCTGCAGACGACGCAGCCGCGTACGTGGAGCGGCTGGCCGCCAAGTTGGCCTGTTGCGTATAG

Upstream 100 bases:

>100_bases
ACGCGATTCGATCAACCACGCTAGCGCACGTTCGGGTGCCGCTGCCGGAGCGACCGGCGCTCGCGACATTAACGACTGGA
CGGCCGCTTGCCCGGCGCAG

Downstream 100 bases:

>100_bases
GGCGAGCAGACGCATAAGCCCCCGACACGCCGAGCGTGCGGGGGCTTATGCGTCTGCTCGCCCTAGAGACTGAGCAAGAT
CTCCCGGGCCAGCGCCGCGG

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MEHVLIRCMHYGLVLFTSDRGITPAAAARLAESHGFRTFYVPEHTHIPVKRQAAHPTTGDASLPDDRYMRTLDPWVSLGA
ASAVTSRIRLATAVALPVEHDPITLAKSIATLDHLSHGRVSVGVGFGWNTDELVDHGVPPGRRRTMLREYLEAMRALWTQ
EEACYDGEFVKFGPSWAWPKPVQPHIPVLVGAAGTEKNFKWIARSADGWITTPRDVDIDEPVKLLQDIWAAAGRDGLPQI
VALDVKPVPDKLARWAELGVTEVLFGMPDRSADDAAAYVERLAAKLACCV

Sequences:

>Translated_290_residues
MEHVLIRCMHYGLVLFTSDRGITPAAAARLAESHGFRTFYVPEHTHIPVKRQAAHPTTGDASLPDDRYMRTLDPWVSLGA
ASAVTSRIRLATAVALPVEHDPITLAKSIATLDHLSHGRVSVGVGFGWNTDELVDHGVPPGRRRTMLREYLEAMRALWTQ
EEACYDGEFVKFGPSWAWPKPVQPHIPVLVGAAGTEKNFKWIARSADGWITTPRDVDIDEPVKLLQDIWAAAGRDGLPQI
VALDVKPVPDKLARWAELGVTEVLFGMPDRSADDAAAYVERLAAKLACCV
>Mature_290_residues
MEHVLIRCMHYGLVLFTSDRGITPAAAARLAESHGFRTFYVPEHTHIPVKRQAAHPTTGDASLPDDRYMRTLDPWVSLGA
ASAVTSRIRLATAVALPVEHDPITLAKSIATLDHLSHGRVSVGVGFGWNTDELVDHGVPPGRRRTMLREYLEAMRALWTQ
EEACYDGEFVKFGPSWAWPKPVQPHIPVLVGAAGTEKNFKWIARSADGWITTPRDVDIDEPVKLLQDIWAAAGRDGLPQI
VALDVKPVPDKLARWAELGVTEVLFGMPDRSADDAAAYVERLAAKLACCV

Specific function: Unknown

COG id: COG2141

COG function: function code C; Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.tuberculosis Rv2161c and Rv3079c [H]

Homologues:

Organism=Escherichia coli, GI1787247, Length=144, Percent_Identity=32.6388888888889, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019921
- InterPro:   IPR011251
- InterPro:   IPR016048 [H]

Pfam domain/function: PF00296 Bac_luciferase [H]

EC number: NA

Molecular weight: Translated: 31896; Mature: 31896

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEHVLIRCMHYGLVLFTSDRGITPAAAARLAESHGFRTFYVPEHTHIPVKRQAAHPTTGD
CCHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCC
ASLPDDRYMRTLDPWVSLGAASAVTSRIRLATAVALPVEHDPITLAKSIATLDHLSHGRV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHCCCCCE
SVGVGFGWNTDELVDHGVPPGRRRTMLREYLEAMRALWTQEEACYDGEFVKFGPSWAWPK
EEEECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCEEEECCCCCCCC
PVQPHIPVLVGAAGTEKNFKWIARSADGWITTPRDVDIDEPVKLLQDIWAAAGRDGLPQI
CCCCCCCEEEECCCCCCCCEEEEECCCCCEECCCCCCCHHHHHHHHHHHHHCCCCCCCCE
VALDVKPVPDKLARWAELGVTEVLFGMPDRSADDAAAYVERLAAKLACCV
EEEECCCCHHHHHHHHHHCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEHVLIRCMHYGLVLFTSDRGITPAAAARLAESHGFRTFYVPEHTHIPVKRQAAHPTTGD
CCHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCC
ASLPDDRYMRTLDPWVSLGAASAVTSRIRLATAVALPVEHDPITLAKSIATLDHLSHGRV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHCCCCCE
SVGVGFGWNTDELVDHGVPPGRRRTMLREYLEAMRALWTQEEACYDGEFVKFGPSWAWPK
EEEECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCEEEECCCCCCCC
PVQPHIPVLVGAAGTEKNFKWIARSADGWITTPRDVDIDEPVKLLQDIWAAAGRDGLPQI
CCCCCCCEEEECCCCCCCCEEEEECCCCCEECCCCCCCHHHHHHHHHHHHHCCCCCCCCE
VALDVKPVPDKLARWAELGVTEVLFGMPDRSADDAAAYVERLAAKLACCV
EEEECCCCHHHHHHHHHHCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]